Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACLIIK_RS28095 Genome accession   NZ_OZ176236
Coordinates   6051367..6051885 (-) Length   172 a.a.
NCBI ID   WP_062838810.1    Uniprot ID   -
Organism   Achromobacter mucicolens isolate LjRoot1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6046367..6056885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIIK_RS28080 - 6046796..6047779 (-) 984 WP_226847588.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  ACLIIK_RS28085 - 6047776..6050211 (-) 2436 WP_226847589.1 YfhO family protein -
  ACLIIK_RS28090 - 6050250..6050933 (-) 684 WP_255616245.1 glycosyltransferase family 2 protein -
  ACLIIK_RS28095 ssb 6051367..6051885 (-) 519 WP_062838810.1 single-stranded DNA-binding protein Machinery gene
  ACLIIK_RS28100 - 6052181..6053365 (-) 1185 WP_056327097.1 MFS transporter -
  ACLIIK_RS28105 uvrA 6053603..6056458 (+) 2856 WP_062838809.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18463.48 Da        Isoelectric Point: 5.9656

>NTDB_id=1167940 ACLIIK_RS28095 WP_062838810.1 6051367..6051885(-) (ssb) [Achromobacter mucicolens isolate LjRoot1]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSSWKDKASGEKREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPRQQRAAPAQRPAPQQRPAAPAAAPASSG
ANLADMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1167940 ACLIIK_RS28095 WP_062838810.1 6051367..6051885(-) (ssb) [Achromobacter mucicolens isolate LjRoot1]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCGGC
AATCTGCAACATGTCGATCGCCACGACCTCGTCCTGGAAGGACAAGGCCAGCGGCGAAAAGCGCGAAGAAACCGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCTGAAATCGCCGGCGAATACCTGAAGAAAGGCCGCTCGGTCTACATCGAAGGC
CGCCTCAAGACGCGCAAGTGGCAAGACAAGGACACCGGCGCCGACCGTTACAGCACCGAAATCGTCGCTGACCAGATGCA
AATGCTGGGTGGCCGCGAAGACGGCGGCGGCGGTGGCGGCAGCTACGGCGGCGGTGGCGGCTACGACGACGCCCCGCGCC
AGCAACGCGCCGCCCCGGCGCAGCGCCCCGCGCCCCAGCAGCGCCCGGCGGCTCCCGCAGCGGCCCCGGCCAGCAGCGGC
GCCAATCTGGCGGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.747

100

0.558
  ssb Glaesserella parasuis strain SC1401

50.802

100

0.552
  ssb Neisseria meningitidis MC58

51.136

100

0.523
  ssb Neisseria gonorrhoeae MS11

51.136

100

0.523

Multiple sequence alignment