Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   X953_RS18705 Genome accession   NZ_CP007161
Coordinates   3802127..3802609 (-) Length   160 a.a.
NCBI ID   WP_040956881.1    Uniprot ID   A0A075JU30
Organism   Virgibacillus sp. SK37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3797127..3807609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X953_RS18685 (X953_19660) - 3797421..3799394 (-) 1974 WP_040956878.1 DHH family phosphoesterase -
  X953_RS18690 (X953_19665) - 3799440..3800384 (-) 945 WP_040956879.1 YybS family protein -
  X953_RS18695 (X953_19670) - 3800756..3801244 (+) 489 WP_040956880.1 DUF1189 family protein -
  X953_RS18700 (X953_19675) rpsR 3801861..3802091 (-) 231 WP_019375779.1 30S ribosomal protein S18 -
  X953_RS18705 (X953_19680) ssbA 3802127..3802609 (-) 483 WP_040956881.1 single-stranded DNA-binding protein Machinery gene
  X953_RS18710 (X953_19685) rpsF 3802625..3802915 (-) 291 WP_019375777.1 30S ribosomal protein S6 -
  X953_RS18715 (X953_19690) ychF 3803119..3804219 (-) 1101 WP_040956882.1 redox-regulated ATPase YchF -
  X953_RS18720 (X953_19695) - 3804506..3804706 (-) 201 WP_040956883.1 DUF951 domain-containing protein -
  X953_RS18725 (X953_19700) - 3804744..3805682 (-) 939 WP_084715749.1 mechanosensitive ion channel family protein -
  X953_RS18730 (X953_19705) - 3805743..3806771 (-) 1029 WP_040956884.1 membrane protein -
  X953_RS18735 (X953_19710) yyaC 3806859..3807476 (+) 618 WP_040956885.1 spore protease YyaC -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17935.77 Da        Isoelectric Point: 4.9222

>NTDB_id=116673 X953_RS18705 WP_040956881.1 3802127..3802609(-) (ssbA) [Virgibacillus sp. SK37]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTIAVNRPFSNQQGNREADFINCVVWRRPAENLANFMKKGSMIGVDGRVQTR
TFEGQDGKTVFVTEIVADSVQFLESKGSSQDRGQGASGFQQNRNQNQFQPSQNQNQNQPQEDPFRNNGEPIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=116673 X953_RS18705 WP_040956881.1 3802127..3802609(-) (ssbA) [Virgibacillus sp. SK37]
ATGTTAAATCGTGTCGTACTTGTCGGCAGGTTAACGAAGGATCCTGATTTACGTTATACACCAAACGGAGTTGCAGTAGC
TAACTTCACCATAGCAGTTAATCGACCTTTTTCCAATCAGCAGGGCAATCGCGAAGCTGACTTTATTAACTGTGTCGTTT
GGCGTAGACCGGCAGAAAATCTCGCTAATTTCATGAAAAAAGGTAGCATGATTGGTGTAGATGGCCGTGTACAAACACGT
ACATTTGAAGGACAAGATGGTAAGACTGTTTTTGTAACAGAAATTGTAGCAGACAGTGTACAATTTTTAGAATCAAAAGG
CTCGTCTCAGGATAGAGGCCAGGGTGCATCAGGATTCCAGCAAAACAGAAACCAGAACCAATTTCAACCGAGTCAGAACC
AAAACCAAAATCAACCTCAAGAGGACCCATTTAGAAATAATGGGGAACCTATCGATATATCAGATGATGATCTTCCTTTC
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075JU30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.209

100

0.669
  ssb Latilactobacillus sakei subsp. sakei 23K

57.225

100

0.619
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

66.25

0.381
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.381

Multiple sequence alignment