Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB5Y62_RS14755 Genome accession   NZ_OZ078860
Coordinates   3269170..3269736 (-) Length   188 a.a.
NCBI ID   WP_017078845.1    Uniprot ID   A0A1R3FC98
Organism   Vibrio splendidus isolate A06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3264170..3274736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS14735 - 3264576..3264908 (-) 333 WP_004735948.1 hypothetical protein -
  AB5Y62_RS14740 pilO 3264901..3265548 (-) 648 WP_368084837.1 type 4a pilus biogenesis protein PilO -
  AB5Y62_RS14745 - 3265548..3266990 (-) 1443 WP_368084838.1 MSHA biogenesis protein MshI -
  AB5Y62_RS14750 csrD 3266993..3269008 (-) 2016 WP_368084839.1 RNase E specificity factor CsrD -
  AB5Y62_RS14755 ssb 3269170..3269736 (-) 567 WP_017078845.1 single-stranded DNA-binding protein Machinery gene
  AB5Y62_RS14760 qstR 3270015..3270662 (+) 648 WP_017084684.1 LuxR C-terminal-related transcriptional regulator Regulator
  AB5Y62_RS14765 galU 3270820..3271692 (+) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20757.89 Da        Isoelectric Point: 5.2358

>NTDB_id=1166599 AB5Y62_RS14755 WP_017078845.1 3269170..3269736(-) (ssb) [Vibrio splendidus isolate A06]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNNQQQGSWGQPQQPQQQQQAQQQYSAPAQQQ
PKAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=1166599 AB5Y62_RS14755 WP_017078845.1 3269170..3269736(-) (ssb) [Vibrio splendidus isolate A06]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCCAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAGCAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTCGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACAACCAACAGC
AAGGTAGTTGGGGTCAGCCACAGCAGCCACAACAGCAGCAACAAGCACAACAACAATACAGTGCTCCAGCTCAACAGCAG
CCGAAAGCACCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCC
ATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3FC98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.423

100

0.809
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.574
  ssb Neisseria meningitidis MC58

47.568

98.404

0.468
  ssb Neisseria gonorrhoeae MS11

47.568

98.404

0.468

Multiple sequence alignment