Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   AB5Y62_RS09885 Genome accession   NZ_OZ078860
Coordinates   2176399..2176980 (-) Length   193 a.a.
NCBI ID   WP_004734691.1    Uniprot ID   -
Organism   Vibrio splendidus isolate A06     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2171399..2181980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS09865 - 2171566..2172828 (-) 1263 WP_017091692.1 DUF945 family protein -
  AB5Y62_RS09870 - 2173012..2174955 (+) 1944 WP_368084564.1 ATP-binding protein -
  AB5Y62_RS09875 - 2174948..2175445 (+) 498 WP_017086482.1 response regulator -
  AB5Y62_RS09880 - 2175695..2176237 (+) 543 WP_004734692.1 hypothetical protein -
  AB5Y62_RS09885 tfoX 2176399..2176980 (-) 582 WP_004734691.1 TfoX/Sxy family DNA transformation protein Regulator
  AB5Y62_RS09890 - 2177338..2178258 (+) 921 WP_004734690.1 HDOD domain-containing protein -
  AB5Y62_RS09895 - 2178313..2179218 (+) 906 WP_017083332.1 lysine exporter LysO family protein -
  AB5Y62_RS09900 - 2179393..2179920 (+) 528 WP_004734688.1 hypothetical protein -
  AB5Y62_RS09905 panP 2180040..2181683 (+) 1644 WP_017077843.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22172.59 Da        Isoelectric Point: 9.3844

>NTDB_id=1166593 AB5Y62_RS09885 WP_004734691.1 2176399..2176980(-) (tfoX) [Vibrio splendidus isolate A06]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEGCLFIRGGKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKGCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1166593 AB5Y62_RS09885 WP_004734691.1 2176399..2176980(-) (tfoX) [Vibrio splendidus isolate A06]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAGCATCAAAAACGTTCTATGTTTGGAGGTATCGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTATTGAGTGAAGGTTGTTTATTCATCAGAGGTGGAAAGTCATTAGATAAAAAAC
TGACGGATCTTGACTGTGAAAAGTATCGTCATGTAAAAAAACAGACAACAGCTACCGTAAATTATTACGATATTACTGAC
CTGTTTACATGCGAACATCCTGAATTGGATAGTATTATTCGTACTTCAATCGATAATTCAATTCAGCAACGTAGCTTTAA
GAAATCATCCGCTAGCCGTCGATTGAGAGATCTACCAAACATGCAACTTACGTTAGAGCGCATGGTTAAAAAGGCAGGTG
TGGACGATGTTTCAATGTTTATGCAGTTGGGCGCGCCTGAAGTGTTTAATAAGGTTCGCAAAGCGTACGGAAACGATGTT
GACCTAAAACTACTTTGGAAATTTGCGGGTGCAATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTATTAAAGGGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.575

100

0.736
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.575

100

0.736
  tfoX Vibrio cholerae strain A1552

73.575

100

0.736
  tfoX Vibrio campbellii strain DS40M4

70.466

100

0.705
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.466

100

0.705
  tfoX Aliivibrio fischeri ES114

58.511

97.409

0.57

Multiple sequence alignment