Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABQ278_RS08450 Genome accession   NZ_OZ075108
Coordinates   1725290..1725787 (+) Length   165 a.a.
NCBI ID   WP_349322094.1    Uniprot ID   A0AAT9IWG0
Organism   Asticcacaulis sp. MM231 isolate Asticcacaulis sp. strain MM231     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1720290..1730787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ278_RS08435 (MMA231_01721) - 1720614..1723601 (+) 2988 WP_349322091.1 transcriptional regulator -
  ABQ278_RS08440 (MMA231_01722) - 1723783..1724457 (+) 675 WP_349322092.1 hypothetical protein -
  ABQ278_RS08445 (MMA231_01723) - 1724608..1725075 (+) 468 WP_349322093.1 hypothetical protein -
  ABQ278_RS08450 (MMA231_01724) ssb 1725290..1725787 (+) 498 WP_349322094.1 single-stranded DNA-binding protein Machinery gene
  ABQ278_RS08455 gyrA 1725876..1728680 (+) 2805 WP_349322095.1 DNA gyrase subunit A -
  ABQ278_RS08460 (MMA231_01726) coaD 1728702..1729205 (+) 504 WP_349322096.1 pantetheine-phosphate adenylyltransferase -
  ABQ278_RS08465 (MMA231_01727) - 1729224..1729769 (+) 546 WP_349322097.1 peptidylprolyl isomerase -
  ABQ278_RS08470 (MMA231_01728) - 1729769..1730104 (+) 336 WP_349319230.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17776.55 Da        Isoelectric Point: 5.0100

>NTDB_id=1166555 ABQ278_RS08450 WP_349322094.1 1725290..1725787(+) (ssb) [Asticcacaulis sp. MM231 isolate Asticcacaulis sp. strain MM231]
MAGSVNKVILVGNLGKDPEIRTLNSGDRVANLTIATSETWRDKSSGERKEKTEWHRVVIFNDNLAKIAEQYLRKGSSVYL
EGSLQTRKWTDQQGVEKYSTEVVLQKFNGNLTLLGGRGDSGGGASSSGGYDQYEDSYGGAPASSGPKASPAGAPQNFDLD
DEIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1166555 ABQ278_RS08450 WP_349322094.1 1725290..1725787(+) (ssb) [Asticcacaulis sp. MM231 isolate Asticcacaulis sp. strain MM231]
ATGGCAGGCAGTGTCAATAAGGTCATTCTGGTAGGTAATCTCGGTAAGGACCCGGAAATCCGCACGCTCAATTCGGGCGA
CCGCGTCGCCAACCTGACGATCGCCACCTCGGAAACCTGGCGCGACAAGTCTTCGGGCGAGCGCAAGGAAAAGACGGAAT
GGCACCGCGTAGTGATCTTCAACGACAACCTGGCCAAGATCGCCGAGCAGTATCTGCGCAAGGGTTCGTCGGTTTACCTC
GAAGGCTCGCTGCAAACGCGCAAATGGACGGATCAGCAAGGCGTTGAGAAATACTCGACCGAAGTCGTGCTGCAAAAGTT
CAATGGCAACCTGACGCTCCTGGGTGGTCGTGGTGACAGCGGCGGTGGCGCTTCCTCCAGCGGCGGCTATGATCAATACG
AAGATTCCTACGGTGGCGCACCGGCGTCTTCCGGTCCGAAGGCGTCCCCGGCCGGCGCTCCGCAAAACTTCGATCTCGAC
GACGAAATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.601

100

0.552
  ssb Glaesserella parasuis strain SC1401

47.253

100

0.521
  ssb Neisseria meningitidis MC58

41.667

100

0.455
  ssb Neisseria gonorrhoeae MS11

41.111

100

0.448

Multiple sequence alignment