Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3225_RS04570 Genome accession   NZ_OZ061332
Coordinates   884399..884911 (+) Length   170 a.a.
NCBI ID   WP_076786702.1    Uniprot ID   A0A1X7QGR0
Organism   Latilactobacillus curvatus isolate Latilactobacillus curvatus J116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 879399..889911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3225_RS04560 gyrA 881234..883820 (+) 2587 Protein_864 DNA gyrase subunit A -
  AB3225_RS04565 rpsF 884063..884359 (+) 297 WP_076786704.1 30S ribosomal protein S6 -
  AB3225_RS04570 ssb 884399..884911 (+) 513 WP_076786702.1 single-stranded DNA-binding protein Machinery gene
  AB3225_RS04575 rpsR 884942..885181 (+) 240 WP_004265822.1 30S ribosomal protein S18 -
  AB3225_RS04580 - 885398..887428 (+) 2031 WP_076786700.1 DHH family phosphoesterase -
  AB3225_RS04585 rplI 887450..887902 (+) 453 WP_253726635.1 50S ribosomal protein L9 -
  AB3225_RS04590 dnaB 888047..889450 (+) 1404 WP_172821848.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18594.13 Da        Isoelectric Point: 4.6856

>NTDB_id=1165961 AB3225_RS04570 WP_076786702.1 884399..884911(+) (ssb) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1165961 AB3225_RS04570 WP_076786702.1 884399..884911(+) (ssb) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAGCAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X7QGR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

97.647

100

0.976
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371
  ssb Glaesserella parasuis strain SC1401

33.155

100

0.365

Multiple sequence alignment