Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3221_RS00040 Genome accession   NZ_OZ061323
Coordinates   9505..10017 (+) Length   170 a.a.
NCBI ID   WP_004265848.1    Uniprot ID   A0A0B2XPH3
Organism   Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4505..15017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3221_RS00030 gyrA 6341..8926 (+) 2586 WP_367369858.1 DNA gyrase subunit A -
  AB3221_RS00035 rpsF 9169..9465 (+) 297 WP_004265809.1 30S ribosomal protein S6 -
  AB3221_RS00040 ssb 9505..10017 (+) 513 WP_004265848.1 single-stranded DNA-binding protein Machinery gene
  AB3221_RS00045 rpsR 10048..10287 (+) 240 WP_004265822.1 30S ribosomal protein S18 -
  AB3221_RS00050 - 10504..12534 (+) 2031 WP_148484858.1 DHH family phosphoesterase -
  AB3221_RS00055 rplI 12556..13008 (+) 453 WP_004265788.1 50S ribosomal protein L9 -
  AB3221_RS00060 dnaB 13153..14556 (+) 1404 WP_172821848.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18621.16 Da        Isoelectric Point: 4.6856

>NTDB_id=1165848 AB3221_RS00040 WP_004265848.1 9505..10017(+) (ssb) [Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNNNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1165848 AB3221_RS00040 WP_004265848.1 9505..10017(+) (ssb) [Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCTGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAACAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B2XPH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

97.059

100

0.971
  ssbA Bacillus subtilis subsp. subtilis str. 168

56

100

0.576
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

62.353

0.371
  ssb Glaesserella parasuis strain SC1401

33.155

100

0.365

Multiple sequence alignment