Detailed information NTG1165805

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AB3226_RS10180
• Genome accession: NZ_OZ061318
• Coordinates: 2274537..2275409 (+)
• Length: 290 a.a.
• NCBI ID: WP_367372983.1
• Uniprot ID: -
• Organism: Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2269537..2280409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3226_RS10155	-	2269640..2269936 (+)	297	WP_367372980.1	DUF2845 domain-containing protein	-
AB3226_RS10160	-	2270293..2270649 (-)	357	WP_007901973.1	BON domain-containing protein	-
AB3226_RS10165	-	2270964..2271389 (-)	426	WP_218398775.1	pilin	-
AB3226_RS10170	pilB	2271615..2273315 (+)	1701	WP_367372981.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AB3226_RS10175	pilC	2273318..2274535 (+)	1218	WP_367372982.1	type II secretion system F family protein	Machinery gene
AB3226_RS10180	pilD	2274537..2275409 (+)	873	WP_367372983.1	A24 family peptidase	Machinery gene
AB3226_RS10185	coaE	2275406..2276029 (+)	624	WP_367372984.1	dephospho-CoA kinase	-
AB3226_RS10190	yacG	2276026..2276226 (+)	201	WP_077750267.1	DNA gyrase inhibitor YacG	-
AB3226_RS10195	-	2276236..2276451 (-)	216	WP_007938959.1	hypothetical protein	-
AB3226_RS10200	-	2276515..2277204 (-)	690	WP_367372985.1	energy-coupling factor ABC transporter permease	-
AB3226_RS10205	ppk2	2277545..2278369 (+)	825	WP_367372986.1	polyphosphate kinase 2	-
AB3226_RS10210	-	2278419..2280197 (+)	1779	WP_367372987.1	SulP family inorganic anion transporter	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32212.39 Da
• Isoelectric Point: 7.3244

>NTDB_id=1165805 AB3226_RS10180 WP_367372983.1 2274537..2275409(+) (pilD) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
MSLNEFLNFNPLAFTITALVIGLLIGSFLNVVVWRLPKMLEREWRLQAHDVLDLPPEAPGPAYNLILPHSECPDCGHRIR
AWENIPVLSYLFLRGRCSNCATPISKRYPLTELACGVLSAFVAWHFGFGWQACMVLVLSWGLLAMSLIDAEHQLLPDVLV
LPLIWLGLIVNSFGLFVPLHDALWGAVAGYMALWTVFWLFKLITGKDGIGYGDFKLLAMLGAWGGWQILPLTILLSSLLG
AIIGVILLRLRDAKTSTPLPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=1165805 AB3226_RS10180 WP_367372983.1 2274537..2275409(+) (pilD) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
ATGTCCTTGAACGAATTTCTGAATTTCAACCCACTGGCCTTCACGATCACCGCATTGGTGATCGGTTTGCTGATCGGCAG
TTTCCTCAATGTGGTGGTCTGGCGCCTGCCGAAAATGCTTGAGCGTGAATGGCGCCTGCAGGCCCATGACGTACTGGACT
TGCCACCCGAAGCCCCCGGCCCGGCTTACAACCTGATACTGCCTCACTCCGAGTGCCCAGACTGTGGCCATCGGATTCGA
GCGTGGGAAAATATTCCCGTGCTCAGTTACCTGTTTTTACGTGGGCGATGCTCGAACTGCGCGACGCCCATCAGCAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCGTGCTGTCGGCGTTCGTCGCCTGGCATTTCGGTTTCGGTTGGCAGGCCTGCA
TGGTGCTGGTCCTGAGCTGGGGCCTTTTGGCGATGAGCCTGATCGACGCCGAACACCAGCTGTTGCCGGACGTGCTGGTG
CTGCCGTTGATATGGCTGGGGTTGATCGTCAACAGTTTCGGGCTCTTCGTGCCACTGCATGACGCGCTCTGGGGCGCGGT
AGCCGGCTACATGGCGCTATGGACGGTGTTCTGGCTGTTCAAGCTGATCACCGGCAAGGACGGCATCGGCTACGGTGACT
TCAAGCTATTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCATCGCTGCTGGGC
GCCATCATCGGAGTGATTTTGTTGCGCCTGCGGGACGCAAAAACCTCGACTCCACTGCCCTTTGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.877	98.276	0.5
pilD	Vibrio campbellii strain DS40M4	50	97.241	0.486
pilD	Acinetobacter baumannii D1279779	50.542	95.517	0.483
pilD	Acinetobacter nosocomialis M2	49.819	95.517	0.476
pilD	Neisseria gonorrhoeae MS11	48.519	93.103	0.452