Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3Y84_RS11490 Genome accession   NZ_OZ061291
Coordinates   2316009..2316509 (-) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2311009..2321509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y84_RS11465 gnd 2312080..2312985 (-) 906 WP_367294051.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  AB3Y84_RS11470 - 2313350..2314198 (+) 849 WP_012898662.1 MurR/RpiR family transcriptional regulator -
  AB3Y84_RS11475 - 2314236..2314544 (+) 309 WP_010906371.1 DUF960 domain-containing protein -
  AB3Y84_RS11480 - 2314618..2315391 (-) 774 WP_003131951.1 metallophosphoesterase -
  AB3Y84_RS11485 rpsR 2315590..2315835 (-) 246 WP_003131952.1 30S ribosomal protein S18 -
  AB3Y84_RS11490 ssb 2316009..2316509 (-) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  AB3Y84_RS11495 rpsF 2316539..2316832 (-) 294 WP_003131954.1 30S ribosomal protein S6 -
  AB3Y84_RS11500 - 2317024..2317878 (-) 855 WP_012898664.1 undecaprenyl-diphosphate phosphatase -
  AB3Y84_RS11505 - 2318401..2319867 (+) 1467 WP_367294022.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=1165726 AB3Y84_RS11490 WP_003131953.1 2316009..2316509(-) (ssb) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1165726 AB3Y84_RS11490 WP_003131953.1 2316009..2316509(-) (ssb) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCGCCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373

Multiple sequence alignment