Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   AB3Y84_RS09125 Genome accession   NZ_OZ061291
Coordinates   1849999..1850988 (-) Length   329 a.a.
NCBI ID   WP_367293941.1    Uniprot ID   -
Organism   Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1844999..1855988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y84_RS09110 - 1846365..1847291 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  AB3Y84_RS09115 - 1847445..1848128 (-) 684 WP_098384071.1 O-methyltransferase -
  AB3Y84_RS09120 pepF 1848131..1849936 (-) 1806 WP_026138936.1 oligoendopeptidase F Regulator
  AB3Y84_RS09125 coiA 1849999..1850988 (-) 990 WP_367293941.1 competence protein CoiA Machinery gene
  AB3Y84_RS09130 - 1851062..1852147 (-) 1086 WP_012898312.1 YdcF family protein -
  AB3Y84_RS09135 - 1852309..1853157 (-) 849 WP_010906111.1 alpha/beta hydrolase -
  AB3Y84_RS09140 - 1853349..1854770 (-) 1422 WP_012898314.1 NCS2 family permease -
  AB3Y84_RS09145 - 1855077..1855913 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39552.12 Da        Isoelectric Point: 8.6387

>NTDB_id=1165706 AB3Y84_RS09125 WP_367293941.1 1849999..1850988(-) (coiA) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSYKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYLPEFKQRPDLLVNDKIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGQDLWLKDQITELQKNLVYFSENR
GFYYWELDFKAQKMRLKSLIHEDLRGKIIYLQEEIPFGEGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDKIPLHKFTQIKHNINLYYENFLINFQQNSFKEVYPPRFYAIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=1165706 AB3Y84_RS09125 WP_367293941.1 1849999..1850988(-) (coiA) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTATAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATCTTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATAAAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGCAAGATTTATGGTTAAAAGACCAAATAACAGAACTTCAAAAAAATCTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAGTTAGATTTCAAAGCTCAGAAGATGAGATTAAAATCCCTGATTCATGAAGATTTGCGTGGAAA
AATTATTTATTTACAAGAAGAAATTCCTTTTGGGGAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCAGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCATTTATTGCTCC
TTTGGGATTGAACTTACTTGAAGTTTTTGATGATAAAATTCCTTTACATAAATTTACTCAAATTAAGCATAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGAAGTCTATCCTCCCCGTTTCTATGCTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

74.847

99.088

0.742
  coiA Streptococcus pneumoniae TIGR4

43.168

97.872

0.422
  coiA Streptococcus pneumoniae Rx1

43.168

97.872

0.422
  coiA Streptococcus pneumoniae D39

43.168

97.872

0.422
  coiA Streptococcus pneumoniae R6

43.168

97.872

0.422
  coiA Streptococcus mitis NCTC 12261

42.947

96.96

0.416

Multiple sequence alignment