Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4W64_RS02805 Genome accession   NZ_OZ060418
Coordinates   583679..584194 (-) Length   171 a.a.
NCBI ID   WP_367677971.1    Uniprot ID   -
Organism   Buchnera aphidicola (Brachycaudus tragopogonis) strain Brtragopogonis-B.tra     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 578679..589194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4W64_RS02790 (BUBRTRPOBTRA_555) - 579935..581530 (-) 1596 WP_367677968.1 peptide chain release factor 3 -
  AB4W64_RS02795 (BUBRTRPOBTRA_556) ansA 581897..582910 (+) 1014 WP_367677969.1 asparaginase -
  AB4W64_RS02800 (BUBRTRPOBTRA_557) - 582922..583497 (-) 576 WP_367677970.1 NfuA family Fe-S biogenesis protein -
  AB4W64_RS02805 (BUBRTRPOBTRA_558) ssb 583679..584194 (-) 516 WP_367677971.1 single-stranded DNA-binding protein Machinery gene
  AB4W64_RS02810 (BUBRTRPOBTRA_559) dnaB 584646..586043 (+) 1398 WP_367677972.1 replicative DNA helicase -
  AB4W64_RS02815 (BUBRTRPOBTRA_560) gshB 586356..587315 (+) 960 WP_367677973.1 glutathione synthase -
  AB4W64_RS02820 (BUBRTRPOBTRA_561) ruvX 587326..587751 (+) 426 WP_367677974.1 Holliday junction resolvase RuvX -
  AB4W64_RS02825 (BUBRTRPOBTRA_562) - 587819..588469 (+) 651 WP_367678302.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19460.80 Da        Isoelectric Point: 7.2050

>NTDB_id=1165464 AB4W64_RS02805 WP_367677971.1 583679..584194(-) (ssb) [Buchnera aphidicola (Brachycaudus tragopogonis) strain Brtragopogonis-B.tra]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEIIVNISGTMQMLGSRNSNLQTSSTNDNNINFVKSKKTDKTDLEKNKVKNNFRKESVDVS
SELDFDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1165464 AB4W64_RS02805 WP_367677971.1 583679..584194(-) (ssb) [Buchnera aphidicola (Brachycaudus tragopogonis) strain Brtragopogonis-B.tra]
ATGGCTAGTAGAGGCGTTAATAAAGTTATTCTGATTGGGCATTTAGGACAAGATCCTGAAGTTCGTTATATGCCTAATGG
TAATGCAGTAGTAAACATGACGTTAGCAACTTCAGAAAATTGGAAAGATAAAAATACTGGAGAAAATAAAGAAAAAACTG
AATGGCATAGAATAGTCTTATTTGGTAAATTAGCTGAAATTGCAGGCGAATATCTTAGAAAAGGTTCTCAAGTTTACATT
GAAGGATCATTACAGACTAGAAAGTGGCAAGACCAAAATGGTCTTGAGCGTTATACAACAGAAATTATTGTTAATATTAG
TGGTACTATGCAAATGTTAGGTAGTCGAAATTCTAATTTACAGACATCGTCAACAAATGATAATAATATTAATTTCGTTA
AAAGTAAAAAAACAGATAAAACAGATTTAGAAAAAAATAAAGTAAAAAATAATTTTAGAAAAGAATCAGTTGATGTTTCT
TCAGAATTAGATTTTGACGATGAAATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.425

100

0.591
  ssb Glaesserella parasuis strain SC1401

46.961

100

0.497
  ssb Neisseria meningitidis MC58

43.503

100

0.45
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.444

Multiple sequence alignment