Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4W59_RS02450 Genome accession   NZ_OZ060413
Coordinates   533499..534014 (-) Length   171 a.a.
NCBI ID   WP_367673062.1    Uniprot ID   -
Organism   Buchnera aphidicola (Cavariella theobaldi) strain Catheobaldi-2779     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 528499..539014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4W59_RS02430 (BUCATHDI2779_487) - 528741..529982 (-) 1242 WP_367673058.1 phosphopentomutase -
  AB4W59_RS02435 (BUCATHDI2779_488) - 530036..531634 (-) 1599 WP_367673059.1 peptide chain release factor 3 -
  AB4W59_RS02440 (BUCATHDI2779_489) - 531982..532557 (-) 576 WP_367673060.1 NfuA family Fe-S biogenesis protein -
  AB4W59_RS02445 (BUCATHDI2779_490) bioH 532660..533436 (+) 777 WP_367673061.1 pimeloyl-ACP methyl ester esterase BioH -
  AB4W59_RS02450 (BUCATHDI2779_491) ssb 533499..534014 (-) 516 WP_367673062.1 single-stranded DNA-binding protein Machinery gene
  AB4W59_RS02455 (BUCATHDI2779_492) dusA 534190..535218 (+) 1029 WP_367673063.1 tRNA dihydrouridine(20/20a) synthase DusA -
  AB4W59_RS02460 (BUCATHDI2779_493) dnaB 535361..536740 (+) 1380 WP_367673064.1 replicative DNA helicase -
  AB4W59_RS02465 (BUCATHDI2779_494) gshB 536862..537839 (+) 978 WP_367673065.1 glutathione synthase -
  AB4W59_RS02470 (BUCATHDI2779_495) ruvX 537844..538254 (+) 411 WP_367673066.1 Holliday junction resolvase RuvX -
  AB4W59_RS02475 (BUCATHDI2779_496) - 538384..538980 (+) 597 WP_367673352.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.73 Da        Isoelectric Point: 7.3166

>NTDB_id=1165457 AB4W59_RS02450 WP_367673062.1 533499..534014(-) (ssb) [Buchnera aphidicola (Cavariella theobaldi) strain Catheobaldi-2779]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNSGENKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEVIVNIGGTMQMLGNRNTSSNSFASNDSQTKRLKSKKLEKNNTLKHEEQYKDDKSLLNTS
SEIDFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1165457 AB4W59_RS02450 WP_367673062.1 533499..534014(-) (ssb) [Buchnera aphidicola (Cavariella theobaldi) strain Catheobaldi-2779]
ATGGCGAGTCGAGGTGTAAATAAAGTTATTTTAATCGGTCACTTGGGACAAGATCCTGAAGTGCGTTATATGCCAAATGG
AAATGCCGTTGTTAATATGACGCTAGCTACTTCCGAAAATTGGAAAGACAAAAATTCTGGGGAGAACAAAGAAAAAACTG
AGTGGCATAGGATTGTTTTATTTGGAAAATTAGCCGAAATCGCTGGCGAATATCTTCGAAAAGGTTCTCAAGTTTATATT
GAAGGATCTTTGCAAACAAGAAAGTGGCAAGATCAAAATGGCTTAGAACGATATACTACAGAAGTAATTGTTAATATTGG
AGGTACAATGCAAATGCTTGGTAATCGAAATACCAGTTCAAATTCTTTTGCATCCAATGATAGTCAAACTAAAAGATTGA
AATCTAAAAAATTAGAAAAAAATAATACGTTAAAACATGAAGAGCAATATAAAGATGATAAATCATTATTAAATACATCT
TCGGAAATAGATTTTGATGACGACATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.778

100

0.608
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.491
  ssb Neisseria meningitidis MC58

43.182

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.182

100

0.444

Multiple sequence alignment