Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4W67_RS02685 Genome accession   NZ_OZ060405
Coordinates   549901..550407 (-) Length   168 a.a.
NCBI ID   WP_367682491.1    Uniprot ID   -
Organism   Buchnera aphidicola (Protaphis terricola) strain Prterricola-2569     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 544901..555407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4W67_RS02665 (BUPRTERA2569_531) - 545055..546287 (-) 1233 WP_367682488.1 phosphopentomutase -
  AB4W67_RS02670 (BUPRTERA2569_532) - 546323..547909 (-) 1587 WP_367682489.1 peptide chain release factor 3 -
  AB4W67_RS02675 (BUPRTERA2569_533) - 548390..548965 (-) 576 WP_367682809.1 NfuA family Fe-S biogenesis protein -
  AB4W67_RS02680 (BUPRTERA2569_534) bioH 549070..549846 (+) 777 WP_367682490.1 pimeloyl-ACP methyl ester esterase BioH -
  AB4W67_RS02685 (BUPRTERA2569_535) ssb 549901..550407 (-) 507 WP_367682491.1 single-stranded DNA-binding protein Machinery gene
  AB4W67_RS02690 (BUPRTERA2569_536) dnaB 551057..552454 (+) 1398 WP_367682492.1 replicative DNA helicase -
  AB4W67_RS02695 (BUPRTERA2569_537) gshB 552557..553513 (+) 957 WP_367682493.1 glutathione synthase -
  AB4W67_RS02700 (BUPRTERA2569_538) ruvX 553518..553940 (+) 423 WP_367682494.1 Holliday junction resolvase RuvX -
  AB4W67_RS02705 (BUPRTERA2569_539) - 553957..554628 (+) 672 WP_367682495.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19143.33 Da        Isoelectric Point: 5.7559

>NTDB_id=1165450 AB4W67_RS02685 WP_367682491.1 549901..550407(-) (ssb) [Buchnera aphidicola (Protaphis terricola) strain Prterricola-2569]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGENKEKTEWHRVVLFGKLAEIAGEYLHKGSQVYI
EGSLQTRRWQDQNGFERYTTEVIVNIGGTMQMLGNRNSNSNKLTTNESNLSKSKKIENTDKSQNLEKYKLDKEQVDSSEI
DFDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1165450 AB4W67_RS02685 WP_367682491.1 549901..550407(-) (ssb) [Buchnera aphidicola (Protaphis terricola) strain Prterricola-2569]
ATGGCAAGTAGAGGTGTAAATAAAGTTATTTTAATTGGTCATTTAGGTCAAGATCCAGAAGTCAGATATATGCCAAATGG
AAATGCAGTAGTGAATATGACTCTTGCAACTTCGGAAAATTGGAAAGATAAAAATACAGGTGAAAATAAAGAAAAAACAG
AATGGCATAGAGTAGTATTATTTGGAAAATTAGCGGAAATAGCTGGAGAATATTTACATAAAGGATCTCAAGTATATATT
GAAGGATCATTGCAAACAAGAAGATGGCAAGATCAGAATGGTTTTGAACGATATACTACTGAAGTAATAGTAAATATTGG
TGGAACAATGCAAATGTTAGGAAATAGAAATTCTAATTCTAATAAACTTACTACTAATGAAAGTAATCTTTCAAAATCTA
AAAAAATAGAGAATACTGATAAATCTCAAAATTTAGAAAAATATAAATTAGACAAAGAACAAGTTGATTCTTCAGAAATT
GATTTTGATGATGAGATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.497

100

0.595
  ssb Glaesserella parasuis strain SC1401

44.505

100

0.482
  ssb Neisseria gonorrhoeae MS11

43.182

100

0.452
  ssb Neisseria meningitidis MC58

43.182

100

0.452

Multiple sequence alignment