Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4W51_RS02420 Genome accession   NZ_OZ060402
Coordinates   545994..546509 (-) Length   171 a.a.
NCBI ID   WP_367676538.1    Uniprot ID   -
Organism   Buchnera aphidicola (Eriosoma grossulariae) strain Ergrossulariae-3692     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 540994..551509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4W51_RS02400 (BUERGRSR3692_477) - 541136..542359 (-) 1224 WP_367676535.1 phosphopentomutase -
  AB4W51_RS02405 (BUERGRSR3692_478) - 542544..544139 (-) 1596 WP_367676833.1 peptide chain release factor 3 -
  AB4W51_RS02410 (BUERGRSR3692_479) - 544411..544983 (-) 573 WP_367676536.1 NfuA family Fe-S biogenesis protein -
  AB4W51_RS02415 (BUERGRSR3692_480) bioH 545144..545929 (+) 786 WP_367676537.1 pimeloyl-ACP methyl ester esterase BioH -
  AB4W51_RS02420 (BUERGRSR3692_481) ssb 545994..546509 (-) 516 WP_367676538.1 single-stranded DNA-binding protein Machinery gene
  AB4W51_RS02425 (BUERGRSR3692_482) dnaB 547637..549034 (+) 1398 WP_367676539.1 replicative DNA helicase -
  AB4W51_RS02430 (BUERGRSR3692_483) gshB 549285..550238 (+) 954 WP_367676540.1 glutathione synthase -
  AB4W51_RS02435 (BUERGRSR3692_484) ruvX 550357..550764 (+) 408 WP_367676541.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19145.43 Da        Isoelectric Point: 6.7329

>NTDB_id=1165442 AB4W51_RS02420 WP_367676538.1 545994..546509(-) (ssb) [Buchnera aphidicola (Eriosoma grossulariae) strain Ergrossulariae-3692]
MASRGINKVILIGHLGQDPDIRYMPNGNAVANITLATSDSWKDKNTGELKEKTEWHRVVLFGKPAEITGEYLKKGSQVYI
EGSLHTRRWQDQNGVERYTTEVVVNVSGTMQMLGNRNSNISSSMSTQLNNQKKISKKEKNVLEDDSLNDYPGKNSAVNSL
SPIDFDDEIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1165442 AB4W51_RS02420 WP_367676538.1 545994..546509(-) (ssb) [Buchnera aphidicola (Eriosoma grossulariae) strain Ergrossulariae-3692]
ATGGCTAGCAGAGGAATTAATAAAGTTATTTTAATTGGACATTTAGGACAAGATCCAGATATTCGTTATATGCCTAATGG
TAATGCAGTAGCTAACATTACTCTTGCTACATCTGATAGTTGGAAAGATAAAAATACAGGTGAATTAAAAGAAAAAACAG
AATGGCATAGAGTTGTATTATTTGGAAAACCAGCTGAAATAACAGGTGAATATTTAAAAAAAGGTTCTCAAGTATATATT
GAAGGATCTTTGCATACTAGAAGATGGCAAGACCAAAATGGTGTAGAACGTTATACCACTGAAGTAGTTGTTAACGTTTC
AGGAACAATGCAAATGTTAGGTAATCGTAATTCTAATATATCATCTTCAATGTCAACACAATTAAATAATCAGAAAAAAA
TTTCTAAAAAAGAAAAAAATGTTTTAGAAGATGATTCATTAAATGATTATCCTGGGAAAAACTCTGCTGTAAATTCTTTG
TCTCCAATAGATTTCGATGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.444

100

0.573
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.491
  ssb Neisseria meningitidis MC58

40.341

100

0.415
  ssb Neisseria gonorrhoeae MS11

40.341

100

0.415

Multiple sequence alignment