Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4W60_RS02465 Genome accession   NZ_OZ060386
Coordinates   505980..506504 (-) Length   174 a.a.
NCBI ID   WP_367676117.1    Uniprot ID   -
Organism   Buchnera aphidicola (Neophyllaphis podocarpi) strain Nepodocarpi-3733     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 500980..511504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4W60_RS02440 (BUNEPOCP3733_480) deoD 501096..501806 (-) 711 WP_367676113.1 purine-nucleoside phosphorylase -
  AB4W60_RS02445 (BUNEPOCP3733_481) - 501843..503072 (-) 1230 WP_367676114.1 phosphopentomutase -
  AB4W60_RS02450 (BUNEPOCP3733_482) ansA 503327..504349 (+) 1023 Protein_460 asparaginase -
  AB4W60_RS02455 (BUNEPOCP3733_483) - 504419..504991 (-) 573 WP_367676115.1 NfuA family Fe-S biogenesis protein -
  AB4W60_RS02460 (BUNEPOCP3733_484) bioH 505100..505885 (+) 786 WP_367676116.1 pimeloyl-ACP methyl ester esterase BioH -
  AB4W60_RS02465 (BUNEPOCP3733_485) ssb 505980..506504 (-) 525 WP_367676117.1 single-stranded DNA-binding protein Machinery gene
  AB4W60_RS02470 (BUNEPOCP3733_486) dnaB 506690..508096 (+) 1407 WP_343188595.1 replicative DNA helicase -
  AB4W60_RS02475 (BUNEPOCP3733_487) gshB 508204..509190 (+) 987 WP_367676333.1 glutathione synthase -
  AB4W60_RS02480 (BUNEPOCP3733_488) ruvX 509198..509614 (+) 417 WP_367676118.1 Holliday junction resolvase RuvX -
  AB4W60_RS02485 (BUNEPOCP3733_489) - 509650..510339 (+) 690 WP_343188598.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB4W60_RS02490 (BUNEPOCP3733_490) - 510375..510935 (+) 561 WP_343188599.1 YggT family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19475.60 Da        Isoelectric Point: 8.4121

>NTDB_id=1165436 AB4W60_RS02465 WP_367676117.1 505980..506504(-) (ssb) [Buchnera aphidicola (Neophyllaphis podocarpi) strain Nepodocarpi-3733]
MASRGINKVILIGNLGQDPEIRYMPNGGAVANMTLATSENWKDKNTGESKERTEWHRVVLFGKLAEIAGDYLRKGSQVYI
EGTLQTRKWQDQNGQDRYTTEVVVNINGTMQMLGNRNSGIFSNSNVSTSKSKNLSSSSNNKIINKNHKSSDLNLNENSFN
KNESPIDFEDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=1165436 AB4W60_RS02465 WP_367676117.1 505980..506504(-) (ssb) [Buchnera aphidicola (Neophyllaphis podocarpi) strain Nepodocarpi-3733]
ATGGCAAGCAGAGGAATTAACAAAGTAATATTAATAGGTAATTTAGGTCAAGATCCTGAAATTCGTTATATGCCAAATGG
TGGTGCTGTTGCTAATATGACTTTAGCAACCTCTGAGAATTGGAAAGATAAAAATACAGGTGAAAGTAAAGAAAGGACAG
AATGGCATCGTGTTGTTTTATTTGGTAAATTAGCTGAAATTGCTGGTGATTATTTACGCAAAGGTTCTCAAGTTTATATA
GAAGGTACTTTACAAACTAGAAAGTGGCAAGATCAGAATGGTCAAGATCGTTATACTACTGAAGTAGTTGTAAATATTAA
CGGTACTATGCAAATGTTAGGTAACCGTAATTCTGGAATTTTTAGTAATTCTAATGTTTCTACATCAAAATCTAAAAACT
TAAGTTCTTCATCTAATAATAAAATTATTAATAAAAATCACAAGTCTTCAGATTTAAATCTAAATGAAAATTCTTTTAAT
AAAAATGAATCTCCAATAGATTTTGAGGATGATATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

61.453

100

0.632
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.5
  ssb Neisseria gonorrhoeae MS11

42.614

100

0.431
  ssb Neisseria meningitidis MC58

41.899

100

0.431

Multiple sequence alignment