Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4W74_RS02780 Genome accession   NZ_OZ060383
Coordinates   573489..573998 (-) Length   169 a.a.
NCBI ID   WP_367681928.1    Uniprot ID   -
Organism   Buchnera aphidicola (Hyalopterus amygdali) strain Hyamygdali-3475     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 568489..578998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4W74_RS02755 (BUHYAMGA3475_549) - 569148..570746 (-) 1599 WP_367681925.1 peptide chain release factor 3 -
  AB4W74_RS02760 - 571316..571477 (+) 162 WP_367682260.1 asparaginase domain-containing protein -
  AB4W74_RS02765 (BUHYAMGA3475_551) - 571986..572563 (-) 578 Protein_521 NfuA family Fe-S biogenesis protein -
  AB4W74_RS02770 - 572665..573051 (+) 387 WP_367681926.1 alpha/beta fold hydrolase -
  AB4W74_RS02775 - 573104..573433 (+) 330 WP_367681927.1 hypothetical protein -
  AB4W74_RS02780 (BUHYAMGA3475_553) ssb 573489..573998 (-) 510 WP_367681928.1 single-stranded DNA-binding protein Machinery gene
  AB4W74_RS02785 (BUHYAMGA3475_554) dnaB 574962..576359 (+) 1398 WP_367681929.1 replicative DNA helicase -
  AB4W74_RS02790 (BUHYAMGA3475_555) gshB 576556..577548 (+) 993 WP_367681930.1 glutathione synthase -
  AB4W74_RS02795 (BUHYAMGA3475_556) ruvX 577529..577951 (+) 423 WP_367681931.1 Holliday junction resolvase RuvX -
  AB4W74_RS02800 (BUHYAMGA3475_557) - 577967..578647 (+) 681 WP_367681932.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 19233.41 Da        Isoelectric Point: 5.1004

>NTDB_id=1165430 AB4W74_RS02780 WP_367681928.1 573489..573998(-) (ssb) [Buchnera aphidicola (Hyalopterus amygdali) strain Hyamygdali-3475]
MASRGVNKVILIGHLGQDPEVRYMPNGNAVVNMTLATSENWKDKNTGESKEKTEWHRIVLFGKLAEIAGEYLRKGSQVYI
EGSLQTRKWQDQNGLERYTTEVVVNIGGTMQMLGNRNSNSQNIISNENNNILKTKELERSNSSKNLEKNQTNQEKIDSEE
IDFDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1165430 AB4W74_RS02780 WP_367681928.1 573489..573998(-) (ssb) [Buchnera aphidicola (Hyalopterus amygdali) strain Hyamygdali-3475]
ATGGCAAGCAGAGGTGTAAATAAAGTAATTTTAATTGGTCATTTAGGTCAAGATCCTGAAGTACGTTATATGCCTAATGG
TAATGCAGTGGTAAATATGACGCTTGCAACTTCAGAAAACTGGAAAGATAAAAATACTGGTGAAAGCAAAGAAAAAACAG
AATGGCATAGAATAGTTTTATTTGGAAAGTTAGCTGAAATTGCTGGGGAATATTTAAGAAAAGGTTCACAAGTATATATT
GAAGGATCTCTTCAAACTAGAAAATGGCAGGATCAGAATGGTCTTGAACGTTATACTACAGAAGTAGTAGTTAATATTGG
CGGTACAATGCAAATGTTAGGTAATCGTAATTCTAATTCTCAAAATATTATATCAAACGAAAATAATAATATATTAAAAA
CAAAAGAATTAGAAAGATCTAATTCTTCAAAGAATTTAGAAAAAAATCAAACAAATCAAGAGAAAATTGATTCTGAGGAA
ATAGATTTTGATGATGAAATACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.627

100

0.604
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.509
  ssb Neisseria meningitidis MC58

44.318

100

0.462
  ssb Neisseria gonorrhoeae MS11

43.75

100

0.456

Multiple sequence alignment