Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AU14_RS13080 | Genome accession | NZ_CP007151 |
| Coordinates | 2810299..2810826 (+) | Length | 175 a.a. |
| NCBI ID | WP_041341488.1 | Uniprot ID | W5YJI8 |
| Organism | Marinobacter similis strain A3d10 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2805299..2815826
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AU14_RS13065 (AU14_13505) | rplQ | 2805371..2805769 (+) | 399 | WP_041341481.1 | 50S ribosomal protein L17 | - |
| AU14_RS13070 (AU14_13510) | uvrA | 2805862..2808684 (-) | 2823 | WP_041341483.1 | excinuclease ABC subunit UvrA | - |
| AU14_RS13075 (AU14_13515) | - | 2808870..2810240 (+) | 1371 | WP_041341485.1 | MFS transporter | - |
| AU14_RS13080 (AU14_13520) | ssb | 2810299..2810826 (+) | 528 | WP_041341488.1 | single-stranded DNA-binding protein | Machinery gene |
| AU14_RS13085 (AU14_13525) | - | 2811196..2811957 (+) | 762 | WP_236744068.1 | biogenesis protein MshI | - |
| AU14_RS13090 (AU14_13530) | - | 2811954..2812559 (+) | 606 | WP_041341493.1 | PilN domain-containing protein | - |
| AU14_RS13095 (AU14_13535) | - | 2812559..2813260 (+) | 702 | WP_041341496.1 | MSHA biogenesis protein MshJ | - |
| AU14_RS13100 (AU14_13540) | - | 2813262..2813609 (+) | 348 | WP_236744069.1 | hypothetical protein | - |
| AU14_RS13105 (AU14_13545) | mshL | 2813627..2815336 (+) | 1710 | WP_041343977.1 | pilus (MSHA type) biogenesis protein MshL | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19308.37 Da Isoelectric Point: 4.9464
>NTDB_id=116542 AU14_RS13080 WP_041341488.1 2810299..2810826(+) (ssb) [Marinobacter similis strain A3d10]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRIVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWTNKEGQDVYTTEVVVDINGQMQMLDSRGEGGMNQGAPAGRPQQSNYNAPAPQQNNNPPPQQQSGGYNQPSQG
SMPEPVDDFDDDIPF
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRIVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWTNKEGQDVYTTEVVVDINGQMQMLDSRGEGGMNQGAPAGRPQQSNYNAPAPQQNNNPPPQQQSGGYNQPSQG
SMPEPVDDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=116542 AU14_RS13080 WP_041341488.1 2810299..2810826(+) (ssb) [Marinobacter similis strain A3d10]
ATGGCACGAGGCGTAAACAAAGTCATTCTTATCGGGAACCTTGGTCAGGATCCCGATACCCGTTATACCCCGAACGGCAA
TGCGGTGGTCAACCTGAACCTTGCCACTGACGAGAGCTACAAGGATCGTCAGACCGGACAAATGGTGCCAAAAACCGAGT
GGCACCGTATTGTGCTGTTCGGAAAAGTGGCCGAAGTGGCGGGGCAGTACCTGCGCAAGGGTTCCAAGGTCTACATCGAA
GGCAAGCTGCAAACCCGGAAGTGGACGAACAAAGAAGGCCAGGACGTCTACACCACCGAAGTAGTGGTCGATATCAACGG
CCAGATGCAGATGCTGGACAGCCGCGGTGAAGGCGGCATGAATCAGGGTGCACCCGCGGGGCGTCCTCAGCAGTCCAATT
ACAACGCACCGGCGCCGCAGCAGAACAACAACCCGCCGCCACAGCAGCAGTCGGGTGGTTATAACCAGCCTTCTCAGGGA
AGCATGCCTGAGCCGGTGGACGACTTTGATGATGACATCCCCTTCTAG
ATGGCACGAGGCGTAAACAAAGTCATTCTTATCGGGAACCTTGGTCAGGATCCCGATACCCGTTATACCCCGAACGGCAA
TGCGGTGGTCAACCTGAACCTTGCCACTGACGAGAGCTACAAGGATCGTCAGACCGGACAAATGGTGCCAAAAACCGAGT
GGCACCGTATTGTGCTGTTCGGAAAAGTGGCCGAAGTGGCGGGGCAGTACCTGCGCAAGGGTTCCAAGGTCTACATCGAA
GGCAAGCTGCAAACCCGGAAGTGGACGAACAAAGAAGGCCAGGACGTCTACACCACCGAAGTAGTGGTCGATATCAACGG
CCAGATGCAGATGCTGGACAGCCGCGGTGAAGGCGGCATGAATCAGGGTGCACCCGCGGGGCGTCCTCAGCAGTCCAATT
ACAACGCACCGGCGCCGCAGCAGAACAACAACCCGCCGCCACAGCAGCAGTCGGGTGGTTATAACCAGCCTTCTCAGGGA
AGCATGCCTGAGCCGGTGGACGACTTTGATGATGACATCCCCTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.044 |
100 |
0.583 |
| ssb | Glaesserella parasuis strain SC1401 |
52.66 |
100 |
0.566 |
| ssb | Neisseria gonorrhoeae MS11 |
44.382 |
100 |
0.451 |
| ssb | Neisseria meningitidis MC58 |
44.382 |
100 |
0.451 |