Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB4W45_RS02045 Genome accession   NZ_OZ060380
Coordinates   420434..420937 (-) Length   167 a.a.
NCBI ID   WP_367671186.1    Uniprot ID   -
Organism   Buchnera aphidicola (Periphyllus testudinaceus) strain Petestudinaceus-2671     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 415434..425937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4W45_RS02025 (BUPETEDU2671_404) - 415932..417536 (-) 1605 WP_367671182.1 peptide chain release factor 3 -
  AB4W45_RS02030 (BUPETEDU2671_405) ansA 417748..418755 (+) 1008 WP_367671183.1 asparaginase -
  AB4W45_RS02035 (BUPETEDU2671_406) - 418844..419416 (-) 573 WP_367671184.1 NifU family protein -
  AB4W45_RS02040 (BUPETEDU2671_407) - 419579..420331 (+) 753 WP_367671185.1 alpha/beta fold hydrolase -
  AB4W45_RS02045 (BUPETEDU2671_408) ssb 420434..420937 (-) 504 WP_367671186.1 single-stranded DNA-binding protein Machinery gene
  AB4W45_RS02050 (BUPETEDU2671_409) dusA 421051..422019 (+) 969 WP_367671188.1 tRNA dihydrouridine(20/20a) synthase DusA -
  AB4W45_RS02055 (BUPETEDU2671_410) dnaB 422055..423449 (+) 1395 WP_367671189.1 replicative DNA helicase -
  AB4W45_RS02060 (BUPETEDU2671_411) - 423546..424121 (+) 576 WP_367671191.1 YqgE/AlgH family protein -
  AB4W45_RS02065 (BUPETEDU2671_412) ruvX 424123..424545 (+) 423 WP_367671192.1 Holliday junction resolvase RuvX -
  AB4W45_RS02070 (BUPETEDU2671_413) hemW 424713..425846 (+) 1134 WP_367671193.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18968.40 Da        Isoelectric Point: 9.8903

>NTDB_id=1165418 AB4W45_RS02045 WP_367671186.1 420434..420937(-) (ssb) [Buchnera aphidicola (Periphyllus testudinaceus) strain Petestudinaceus-2671]
MANRGVNKVILIGYLGQDPDIRYMTNGAAVANINIATSENWKDKNTGEMKEKTEWHKVVLFGKLAEIAGDYLRKGSQVYI
EGSLKTRKWTDQNNLDRYTTEIVVNINGSMQMLGNRLNSSSSVENNKKNSLKNTHLKKNKHSNSFKNVNKKSLLDESNID
FEDEIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1165418 AB4W45_RS02045 WP_367671186.1 420434..420937(-) (ssb) [Buchnera aphidicola (Periphyllus testudinaceus) strain Petestudinaceus-2671]
ATGGCTAATCGAGGAGTAAATAAAGTTATTTTAATAGGGTATCTTGGACAAGATCCAGATATTAGATATATGACTAATGG
AGCAGCAGTAGCAAATATTAATATTGCTACTTCTGAAAATTGGAAAGATAAGAATACAGGAGAAATGAAAGAAAAAACAG
AATGGCATAAAGTAGTATTATTTGGAAAATTAGCTGAAATTGCAGGAGATTATTTAAGAAAAGGATCACAAGTATATATA
GAAGGTTCATTAAAAACTAGAAAATGGACTGATCAAAATAATTTAGATAGATATACTACAGAAATTGTTGTAAATATTAA
TGGTTCTATGCAAATGTTAGGTAATCGATTAAATTCTAGTTCTTCAGTTGAAAATAATAAAAAAAATTCTTTAAAAAATA
CACATTTAAAAAAAAATAAACATTCAAATTCATTTAAAAATGTTAATAAAAAATCATTACTTGATGAATCGAATATAGAT
TTTGAAGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.802

100

0.581
  ssb Glaesserella parasuis strain SC1401

44.751

100

0.485
  ssb Neisseria meningitidis MC58

37.222

100

0.401
  ssb Neisseria gonorrhoeae MS11

36.932

100

0.389

Multiple sequence alignment