Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AAHM90_RS01120 Genome accession   NZ_OZ035016
Coordinates   212681..213214 (-) Length   177 a.a.
NCBI ID   WP_075472919.1    Uniprot ID   A0A160SW65
Organism   Buchnera aphidicola (Tuberolachnus salignus) isolate 54702     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 207681..218214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHM90_RS01090 rpe 208360..209028 (-) 669 WP_075472908.1 ribulose-phosphate 3-epimerase -
  AAHM90_RS01095 aroB 209074..210174 (-) 1101 WP_075472910.1 3-dehydroquinate synthase -
  AAHM90_RS01100 aroK 210205..210741 (-) 537 WP_075472912.1 shikimate kinase AroK -
  AAHM90_RS01110 - 211108..211689 (-) 582 WP_075472914.1 NifU family protein -
  AAHM90_RS01115 - 211847..212623 (+) 777 WP_075472916.1 alpha/beta fold hydrolase -
  AAHM90_RS01120 ssb 212681..213214 (-) 534 WP_075472919.1 single-stranded DNA-binding protein Machinery gene
  AAHM90_RS01125 dusA 213419..214420 (+) 1002 WP_075472921.1 tRNA dihydrouridine(20/20a) synthase DusA -
  AAHM90_RS01130 dnaB 214500..215882 (+) 1383 WP_075472923.1 replicative DNA helicase -
  AAHM90_RS01135 ruvX 215917..216345 (+) 429 WP_075472925.1 Holliday junction resolvase RuvX -
  AAHM90_RS01140 - 216431..217555 (+) 1125 WP_075472927.1 hypothetical protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 20089.61 Da        Isoelectric Point: 7.2025

>NTDB_id=1164051 AAHM90_RS01120 WP_075472919.1 212681..213214(-) (ssb) [Buchnera aphidicola (Tuberolachnus salignus) isolate 54702]
MASRGINKVILIGNLGQDPEIRYMPNGGAVLNMTLATSDTWKDKKTGEAKEKTEWHRLVVFGKLAEIAAQYLHKGSQIYI
EGSLQTRKWQDQNGIDRYITEVIVNITGTMQMLGNRNSNQNISRDSLGTKYSSSISEKKNKIQDENYSLKNSDEELKKQD
NLINSTTKLDFEDEIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1164051 AAHM90_RS01120 WP_075472919.1 212681..213214(-) (ssb) [Buchnera aphidicola (Tuberolachnus salignus) isolate 54702]
ATGGCAAGTCGTGGAATTAATAAAGTAATTTTAATTGGAAATTTAGGACAAGATCCTGAAATTAGATATATGCCTAATGG
AGGCGCTGTGTTAAATATGACTTTAGCAACTTCAGATACTTGGAAAGATAAAAAGACTGGAGAAGCTAAAGAAAAAACAG
AATGGCATCGGCTTGTAGTATTTGGTAAATTAGCAGAAATTGCGGCACAATATTTACATAAAGGATCGCAAATTTATATT
GAAGGATCTTTGCAAACTCGTAAATGGCAAGATCAAAATGGAATTGATCGTTATATTACAGAAGTAATTGTTAATATTAC
CGGAACTATGCAAATGTTAGGAAATAGAAATTCTAATCAAAATATTTCTCGAGATTCTTTAGGTACAAAATATTCTTCTT
CAATTTCAGAAAAAAAAAATAAAATTCAAGATGAAAATTATTCTTTAAAAAATTCAGATGAAGAATTAAAAAAACAAGAC
AATTTAATTAATTCAACTACTAAATTAGATTTTGAAGATGAAATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A160SW65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.073

100

0.537
  ssb Glaesserella parasuis strain SC1401

43.407

100

0.446
  ssb Neisseria gonorrhoeae MS11

40.113

100

0.401
  ssb Neisseria meningitidis MC58

40.113

100

0.401

Multiple sequence alignment