Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACL42_RS01105 Genome accession   NZ_OZ026537
Coordinates   225545..226093 (-) Length   182 a.a.
NCBI ID   WP_340147693.1    Uniprot ID   -
Organism   Buchnera aphidicola (Drepanosiphum platanoidis) isolate 54803     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 220545..231093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACL42_RS01085 deoD 220912..221613 (-) 702 WP_340147679.1 purine-nucleoside phosphorylase -
  AACL42_RS01090 - 221695..222936 (-) 1242 WP_340147680.1 phosphopentomutase -
  AACL42_RS01095 ansA 223174..224187 (+) 1014 WP_340147692.1 asparaginase -
  AACL42_RS01100 - 224218..224799 (-) 582 WP_340147681.1 NifU family protein -
  AACL42_RS01105 ssb 225545..226093 (-) 549 WP_340147693.1 single-stranded DNA-binding protein Machinery gene
  AACL42_RS01110 dusA 226234..227211 (+) 978 WP_340147327.1 tRNA dihydrouridine(20/20a) synthase DusA -
  AACL42_RS01115 dnaB 227262..228623 (+) 1362 WP_340147328.1 replicative DNA helicase -
  AACL42_RS01120 gshB 228760..229710 (+) 951 WP_340147329.1 glutathione synthase -
  AACL42_RS01125 ruvX 230114..230518 (+) 405 WP_340147330.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20924.88 Da        Isoelectric Point: 10.2100

>NTDB_id=1163225 AACL42_RS01105 WP_340147693.1 225545..226093(-) (ssb) [Buchnera aphidicola (Drepanosiphum platanoidis) isolate 54803]
MASRGINKVILIGNLGQNPDVRYMPNGSAVANLTLATSETWKDKETGELKEKTEWHRVVLFNKLAEIAGLYLKKGAQIYI
EGSLKTRKWKDSNGIDRYITEIIVNFGGSMQMLGNKHSFNPNFKKKKNFEELNSHKLLKKESKKNFFDNKKVNSKNFKKS
EDKNFSQLNKDDSIDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1163225 AACL42_RS01105 WP_340147693.1 225545..226093(-) (ssb) [Buchnera aphidicola (Drepanosiphum platanoidis) isolate 54803]
ATGGCAAGTAGAGGAATAAATAAAGTAATTTTAATTGGTAATCTTGGCCAAAATCCAGATGTTCGATATATGCCTAATGG
ATCTGCAGTTGCTAATTTAACTCTTGCTACATCAGAGACTTGGAAAGATAAAGAAACAGGAGAATTAAAAGAAAAGACTG
AATGGCATAGAGTTGTTTTGTTTAATAAATTGGCAGAAATTGCTGGTTTATATTTAAAAAAAGGCGCTCAAATATATATT
GAAGGTTCTTTAAAAACTAGAAAATGGAAAGATTCAAATGGAATAGATCGTTATATTACAGAAATTATTGTAAATTTTGG
CGGATCTATGCAGATGTTAGGCAATAAACATTCTTTTAATCCTAATTTTAAAAAAAAAAAAAATTTTGAAGAATTAAATT
CACATAAATTATTAAAAAAAGAATCTAAAAAAAATTTTTTTGATAATAAAAAAGTTAATTCTAAAAATTTTAAAAAATCT
GAAGATAAAAATTTTTCACAATTAAATAAAGATGATTCTATAGATTTTGATGATGACATACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.087

100

0.516
  ssb Glaesserella parasuis strain SC1401

46.703

100

0.467
  ssb Neisseria meningitidis MC58

38.202

97.802

0.374
  ssb Neisseria gonorrhoeae MS11

38.202

97.802

0.374

Multiple sequence alignment