Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AACK90_RS01125 Genome accession   NZ_OZ026466
Coordinates   225027..225515 (-) Length   162 a.a.
NCBI ID   WP_339043644.1    Uniprot ID   -
Organism   Buchnera aphidicola (Periphyllus acericola) isolate 54701     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 220027..230515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACK90_RS01105 - 220576..222174 (-) 1599 WP_339043636.1 peptide chain release factor 3 -
  AACK90_RS01110 ansA 222444..223451 (+) 1008 WP_339043638.1 asparaginase -
  AACK90_RS01115 - 223511..224080 (-) 570 WP_339043640.1 NifU family protein -
  AACK90_RS01120 - 224200..224946 (+) 747 WP_339043642.1 alpha/beta fold hydrolase -
  AACK90_RS01125 ssb 225027..225515 (-) 489 WP_339043644.1 single-stranded DNA-binding protein Machinery gene
  AACK90_RS01130 dusA 225624..226601 (+) 978 WP_339043646.1 tRNA dihydrouridine(20/20a) synthase DusA -
  AACK90_RS01135 dnaB 226630..228030 (+) 1401 WP_339043648.1 replicative DNA helicase -
  AACK90_RS01140 ruvX 228131..228565 (+) 435 WP_339043650.1 Holliday junction resolvase RuvX -
  AACK90_RS01145 - 228525..229211 (+) 687 WP_339043652.1 YggS family pyridoxal phosphate-dependent enzyme -
  AACK90_RS01150 hemW 229272..230405 (+) 1134 WP_339043654.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18334.51 Da        Isoelectric Point: 9.1815

>NTDB_id=1163183 AACK90_RS01125 WP_339043644.1 225027..225515(-) (ssb) [Buchnera aphidicola (Periphyllus acericola) isolate 54701]
MANRGINKVILIGYLGQNPDIRYMTNGSAVANINIATSESWKDKNTGELKEKTEWHKVVLFGKLAEIAGEYLKKGSQVYI
EGSLKTRKWVDQNNLDRYTTEIIVSINGSMQMLGNRQNINKNNINNSYNDNNSKKSSISSKDTNKQSLLHESNTDFEDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1163183 AACK90_RS01125 WP_339043644.1 225027..225515(-) (ssb) [Buchnera aphidicola (Periphyllus acericola) isolate 54701]
ATGGCTAATAGAGGAATTAATAAAGTTATTTTAATAGGATATCTTGGACAAAATCCAGATATTAGATATATGACTAATGG
TTCAGCAGTAGCAAATATTAATATAGCTACTTCAGAAAGTTGGAAAGATAAAAATACAGGAGAATTAAAAGAAAAAACTG
AATGGCATAAAGTTGTGTTATTTGGGAAATTAGCTGAAATTGCTGGGGAGTATTTAAAAAAAGGTTCTCAAGTTTACATA
GAAGGATCATTAAAAACAAGAAAATGGGTTGATCAAAATAATTTAGATCGATATACTACAGAAATTATTGTAAGTATTAA
TGGTTCAATGCAAATGCTTGGAAATAGACAAAATATAAATAAAAATAATATTAATAATTCTTATAATGATAATAATTCTA
AAAAAAGTTCTATTTCTTCAAAAGATACAAATAAACAATCTTTACTTCATGAATCAAATACAGATTTTGAAGATGATATT
CCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.237

100

0.593
  ssb Glaesserella parasuis strain SC1401

45.304

100

0.506
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.414
  ssb Neisseria meningitidis MC58

37.43

100

0.414

Multiple sequence alignment