Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Z042_RS06455 Genome accession   NZ_CP007044
Coordinates   1472781..1473323 (+) Length   180 a.a.
NCBI ID   WP_024913324.1    Uniprot ID   W0L7W3
Organism   Chania multitudinisentens RB-25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1467781..1478323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Z042_RS06440 (Z042_09525) - 1467967..1469160 (+) 1194 WP_024913327.1 amino acid aminotransferase -
  Z042_RS06445 (Z042_09520) - 1469208..1469561 (+) 354 WP_024913326.1 MmcQ/YjbR family DNA-binding protein -
  Z042_RS06450 (Z042_09515) uvrA 1469604..1472435 (-) 2832 WP_024913325.1 excinuclease ABC subunit UvrA -
  Z042_RS06455 (Z042_09510) ssb 1472781..1473323 (+) 543 WP_024913324.1 single-stranded DNA-binding protein SSB1 Machinery gene
  Z042_RS06460 (Z042_09505) - 1474108..1475469 (+) 1362 WP_024913323.1 NCS2 family permease -
  Z042_RS06465 (Z042_09500) - 1475633..1477282 (+) 1650 WP_024913322.1 Na+/H+ antiporter -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19073.12 Da        Isoelectric Point: 5.2456

>NTDB_id=116299 Z042_RS06455 WP_024913324.1 1472781..1473323(+) (ssb) [Chania multitudinisentens RB-25]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKVTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQAGVEKYTTEIVVNVGGTMQMLGGRQGGGAPASGGQPAGGQQGGWGQPQQPQGGNQFSGGQQASTRPAQ
NSAPAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=116299 Z042_RS06455 WP_024913324.1 1472781..1473323(+) (ssb) [Chania multitudinisentens RB-25]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGCCAAGACCCTGAGGTCCGTTATATGCCTAATGG
TGGCGCAGTTGCCAACATTACCCTGGCGACCTCTGAAAGCTGGCGTGACAAAGTGACTGGCGAGCAGAAAGAAAAAACGG
AATGGCATCGCGTGGTGTTGTTCGGCAAGCTGGCAGAGGTGGCGGGTGAATACCTGCGTAAAGGTTCTCAGGTTTACATC
GAAGGCTCTTTGCAGACCCGTAAGTGGACCGATCAGGCTGGCGTAGAAAAATATACCACCGAAATCGTGGTTAACGTGGG
TGGCACCATGCAGATGTTGGGTGGCCGCCAAGGCGGTGGTGCTCCTGCCAGTGGGGGGCAACCAGCCGGCGGCCAGCAGG
GGGGTTGGGGGCAACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGTGGCCAACAGGCTTCGACCAGGCCTGCACAA
AACAGTGCGCCAGCGCCCAGCAATGAACCCCCGATGGATTTTGACGACGATATTCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W0L7W3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.626

100

0.744
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.594
  ssb Neisseria meningitidis MC58

46.667

100

0.467
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.467

Multiple sequence alignment