Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   ABNR90_RS03960 Genome accession   NZ_OZ021673
Coordinates   747658..748131 (-) Length   157 a.a.
NCBI ID   WP_025455870.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae isolate SGC-23-002     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 742658..753131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNR90_RS03935 yaaA 743756..744535 (-) 780 WP_003690913.1 peroxide stress protein YaaA -
  ABNR90_RS03940 dapC 744691..745878 (-) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  ABNR90_RS03945 dut 745956..746408 (-) 453 WP_003702446.1 dUTP diphosphatase -
  ABNR90_RS03950 - 746574..747283 (+) 710 Protein_774 AzlC family ABC transporter permease -
  ABNR90_RS03955 - 747280..747588 (+) 309 WP_003706588.1 AzlD family protein -
  ABNR90_RS03960 pilL 747658..748131 (-) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  ABNR90_RS03965 pilK 748133..748744 (-) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABNR90_RS03970 pilJ 748723..749703 (-) 981 WP_010951046.1 PilW family protein Machinery gene
  ABNR90_RS03975 pilV 749700..750311 (-) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  ABNR90_RS03980 pilH 750343..751008 (-) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABNR90_RS03985 dnaB 751163..752569 (-) 1407 WP_047917169.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17555.36 Da        Isoelectric Point: 9.4067

>NTDB_id=1162856 ABNR90_RS03960 WP_025455870.1 747658..748131(-) (pilL) [Neisseria gonorrhoeae isolate SGC-23-002]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1162856 ABNR90_RS03960 WP_025455870.1 747658..748131(-) (pilL) [Neisseria gonorrhoeae isolate SGC-23-002]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

100

100

1
  pilX Neisseria meningitidis 8013

85.987

100

0.86

Multiple sequence alignment