Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AABQ55_RS13930 Genome accession   NZ_OZ012596
Coordinates   2822681..2823184 (+) Length   167 a.a.
NCBI ID   WP_244765530.1    Uniprot ID   -
Organism   Shinella sp. WSD5-1 isolate ena-SAMPLE-TAB-07-02-2024-12:43:32:187-194197     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2817681..2828184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABQ55_RS13915 - 2818002..2818805 (-) 804 WP_244765533.1 DUF72 domain-containing protein -
  AABQ55_RS13920 - 2818843..2819466 (-) 624 WP_272805420.1 glutathione S-transferase family protein -
  AABQ55_RS13925 uvrA 2819471..2822389 (-) 2919 WP_272805421.1 excinuclease ABC subunit UvrA -
  AABQ55_RS13930 ssb 2822681..2823184 (+) 504 WP_244765530.1 single-stranded DNA-binding protein Machinery gene
  AABQ55_RS13935 - 2823265..2823672 (+) 408 WP_272805422.1 cupin domain-containing protein -
  AABQ55_RS13940 - 2823891..2824520 (-) 630 WP_244765528.1 MarC family protein -
  AABQ55_RS13945 gyrA 2824763..2827543 (+) 2781 WP_272805423.1 DNA gyrase subunit A -
  AABQ55_RS13950 - 2827765..2827911 (-) 147 WP_244765526.1 hypothetical protein -
  AABQ55_RS13955 - 2827925..2828050 (-) 126 WP_256388514.1 hypothetical protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18232.05 Da        Isoelectric Point: 5.9703

>NTDB_id=1162799 AABQ55_RS13930 WP_244765530.1 2822681..2823184(+) (ssb) [Shinella sp. WSD5-1 isolate ena-SAMPLE-TAB-07-02-2024-12:43:32:187-194197]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERREKTEWHNVVVFNEGLCKVVEQYVKKGAKLYI
EGALQTRKWQDQTGNDRYTTEVVLQGFNSTLTMLDGRGEGGGERRGGGDFGAAPNYDDYGSRPASGGGGSSRSSGSLSRD
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1162799 AABQ55_RS13930 WP_244765530.1 2822681..2823184(+) (ssb) [Shinella sp. WSD5-1 isolate ena-SAMPLE-TAB-07-02-2024-12:43:32:187-194197]
ATGGCTGGAAGCGTCAACAAGGTGATCTTGATCGGCAATGTCGGGGCGGACCCGGAAATCCGGCGTACGCAGGACGGTCG
GCCGATCGCCAACCTGCGCATCGCCACCTCCGAGACCTGGCGTGACCGCAACAGCGGCGAACGCCGCGAGAAGACCGAAT
GGCACAATGTCGTGGTCTTCAACGAAGGCCTGTGCAAGGTCGTCGAGCAATACGTCAAGAAAGGCGCGAAACTCTACATC
GAGGGCGCGCTGCAGACCCGCAAGTGGCAGGACCAGACCGGCAACGACCGCTACACGACGGAAGTCGTGCTGCAGGGCTT
CAACTCGACGCTGACCATGCTCGACGGCCGCGGGGAAGGCGGCGGCGAGCGCCGCGGCGGCGGCGATTTCGGCGCGGCGC
CGAACTATGACGATTACGGCTCGCGCCCGGCTTCGGGCGGCGGCGGCAGCAGCCGTTCGAGCGGCTCGCTCTCGCGCGAC
ATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.455

100

0.509
  ssb Vibrio cholerae strain A1552

47.977

100

0.497
  ssb Neisseria meningitidis MC58

36.702

100

0.413
  ssb Neisseria gonorrhoeae MS11

37.363

100

0.407

Multiple sequence alignment