Detailed information
Bioinformatically predicted
Overview
| Name | ideA | Type | Regulator |
| Locus tag | VOI39_RS03250 | Genome accession | NZ_OY979117 |
| Coordinates | 756884..757558 (-) | Length | 224 a.a. |
| NCBI ID | WP_141173068.1 | Uniprot ID | - |
| Organism | Providencia stuartii strain PS13962019BGR isolate PS13962019 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 691632..760876 | 756884..757558 | within | 0 |
Gene organization within MGE regions
Location: 691632..760876
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VOI39_RS02990 (PSTU1396_03055) | - | 691814..692224 (+) | 411 | WP_276507240.1 | DNA polymerase III subunit psi | - |
| VOI39_RS02995 (PSTU1396_03060) | rimI | 692193..692645 (+) | 453 | WP_141173564.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| VOI39_RS03000 (PSTU1396_03065) | - | 692725..693777 (-) | 1053 | WP_072502538.1 | hypothetical protein | - |
| VOI39_RS03005 (PSTU1396_03070) | - | 693989..695557 (-) | 1569 | WP_004926609.1 | BCCT family transporter | - |
| VOI39_RS03010 (PSTU1396_03075) | - | 695849..696976 (+) | 1128 | WP_014656833.1 | aromatic ring-hydroxylating oxygenase subunit alpha | - |
| VOI39_RS03015 (PSTU1396_03080) | - | 696992..698440 (+) | 1449 | WP_040132764.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| VOI39_RS03020 (PSTU1396_03085) | - | 698469..699422 (+) | 954 | WP_004926619.1 | PDR/VanB family oxidoreductase | - |
| VOI39_RS03025 (PSTU1396_03090) | - | 699455..700354 (-) | 900 | WP_004926622.1 | helix-turn-helix domain-containing protein | - |
| VOI39_RS03030 (PSTU1396_03095) | - | 700376..701299 (-) | 924 | WP_004926625.1 | LysR substrate-binding domain-containing protein | - |
| VOI39_RS03035 (PSTU1396_03100) | - | 701408..702475 (+) | 1068 | WP_004926627.1 | tartrate dehydrogenase | - |
| VOI39_RS03040 (PSTU1396_03105) | - | 703605..703916 (+) | 312 | WP_141173562.1 | helix-turn-helix domain-containing protein | - |
| VOI39_RS03045 (PSTU1396_03110) | - | 703909..705123 (+) | 1215 | WP_141173561.1 | type II toxin-antitoxin system HipA family toxin | - |
| VOI39_RS03050 (PSTU1396_03115) | - | 705349..705543 (+) | 195 | WP_000127614.1 | helix-turn-helix transcriptional regulator | - |
| VOI39_RS03055 | - | 705555..706804 (-) | 1250 | Protein_594 | tyrosine-type recombinase/integrase | - |
| VOI39_RS03060 (PSTU1396_03130) | - | 706806..707075 (-) | 270 | WP_141173560.1 | hypothetical protein | - |
| VOI39_RS03065 (PSTU1396_03135) | - | 707078..708052 (-) | 975 | WP_141173559.1 | ParM/StbA family protein | - |
| VOI39_RS03070 (PSTU1396_03140) | mobI | 708517..708915 (+) | 399 | WP_141173558.1 | conjugative transfer protein MobI(A/C) | - |
| VOI39_RS03075 (PSTU1396_03145) | umuC | 708971..710239 (-) | 1269 | WP_141173557.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| VOI39_RS03080 (PSTU1396_03150) | umuD | 710247..710696 (-) | 450 | WP_141173556.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| VOI39_RS03085 (PSTU1396_03155) | - | 711345..712250 (+) | 906 | WP_164456988.1 | 3'-5' exonuclease | - |
| VOI39_RS03090 | - | 712323..712589 (-) | 267 | WP_250170576.1 | hypothetical protein | - |
| VOI39_RS03095 (PSTU1396_03160) | - | 712521..712763 (+) | 243 | WP_284659609.1 | hypothetical protein | - |
| VOI39_RS03100 | - | 713047..713211 (-) | 165 | WP_232074442.1 | hypothetical protein | - |
| VOI39_RS03105 (PSTU1396_03165) | - | 713177..714034 (+) | 858 | WP_232074439.1 | WYL domain-containing protein | - |
| VOI39_RS03110 (PSTU1396_03170) | - | 714139..717024 (+) | 2886 | WP_197742364.1 | DEAD/DEAH box helicase | - |
| VOI39_RS03115 (PSTU1396_03175) | - | 717027..721886 (+) | 4860 | WP_141173552.1 | Eco57I restriction-modification methylase domain-containing protein | - |
| VOI39_RS03120 (PSTU1396_03180) | - | 722050..728472 (+) | 6423 | WP_164456987.1 | DEAD/DEAH box helicase | - |
| VOI39_RS03125 (PSTU1396_03185) | - | 728487..730613 (+) | 2127 | WP_206093044.1 | UvrD-helicase domain-containing protein | - |
| VOI39_RS03130 (PSTU1396_03190) | mobH | 730862..733012 (+) | 2151 | WP_141173549.1 | MobH family relaxase | - |
| VOI39_RS03135 (PSTU1396_03195) | traD | 733060..734880 (+) | 1821 | WP_141173548.1 | conjugative transfer system coupling protein TraD | - |
| VOI39_RS03140 (PSTU1396_03200) | - | 734890..735126 (+) | 237 | Protein_611 | conjugative transfer protein | - |
| VOI39_RS03145 (PSTU1396_03205) | - | 735177..736085 (+) | 909 | WP_061064139.1 | IS481 family transposase | - |
| VOI39_RS03150 (PSTU1396_03210) | - | 736142..736837 (+) | 696 | Protein_613 | Fic family protein | - |
| VOI39_RS03155 (PSTU1396_03220) | - | 737039..737329 (-) | 291 | WP_141173078.1 | HigA family addiction module antitoxin | - |
| VOI39_RS03160 (PSTU1396_03225) | traL | 737563..737844 (+) | 282 | WP_000433889.1 | type IV conjugative transfer system protein TraL | - |
| VOI39_RS03165 (PSTU1396_03230) | - | 737841..738467 (+) | 627 | WP_141173077.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| VOI39_RS03170 (PSTU1396_03235) | - | 738448..739347 (+) | 900 | WP_404935943.1 | type-F conjugative transfer system secretin TraK | - |
| VOI39_RS03175 (PSTU1396_03240) | - | 739350..740639 (+) | 1290 | WP_141173076.1 | TraB/VirB10 family protein | - |
| VOI39_RS03180 | traV | 740714..741286 (+) | 573 | Protein_619 | type IV conjugative transfer system lipoprotein TraV | - |
| VOI39_RS03185 (PSTU1396_03250) | traA | 741283..741669 (+) | 387 | WP_141173075.1 | TraA family conjugative transfer protein | - |
| VOI39_RS03190 (PSTU1396_03255) | - | 741889..742680 (+) | 792 | WP_141173081.1 | type IV toxin-antitoxin system AbiEi family antitoxin | - |
| VOI39_RS03195 (PSTU1396_03260) | - | 742673..743611 (+) | 939 | WP_141173074.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| VOI39_RS03200 (PSTU1396_03265) | - | 743743..744435 (+) | 693 | WP_141173073.1 | DsbC family protein | - |
| VOI39_RS03205 (PSTU1396_03270) | traC | 744435..746834 (+) | 2400 | Protein_624 | type IV secretion system protein TraC | - |
| VOI39_RS03210 (PSTU1396_03280) | - | 746827..747174 (+) | 348 | WP_141173072.1 | plasmid-related protein | - |
| VOI39_RS03215 (PSTU1396_03285) | - | 747158..747670 (+) | 513 | WP_169636932.1 | S26 family signal peptidase | - |
| VOI39_RS03220 (PSTU1396_03290) | - | 747678..748805 (+) | 1128 | WP_232074373.1 | TrbC family F-type conjugative pilus assembly protein | - |
| VOI39_RS03225 (PSTU1396_03295) | - | 748789..749817 (+) | 1029 | WP_012368375.1 | TraU family protein | - |
| VOI39_RS03230 (PSTU1396_03300) | traN | 749820..753512 (+) | 3693 | WP_141173070.1 | conjugal transfer protein TraN | - |
| VOI39_RS03235 (PSTU1396_03305) | - | 753754..754002 (+) | 249 | WP_164456986.1 | hypothetical protein | - |
| VOI39_RS03240 (PSTU1396_03310) | - | 754012..756285 (+) | 2274 | WP_141173069.1 | dynamin family protein | - |
| VOI39_RS03245 (PSTU1396_03315) | - | 756305..756823 (+) | 519 | WP_052921257.1 | hypothetical protein | - |
| VOI39_RS03250 (PSTU1396_03320) | ideA | 756884..757558 (-) | 675 | WP_141173068.1 | endonuclease | Regulator |
| VOI39_RS03255 (PSTU1396_03325) | - | 757670..758272 (-) | 603 | WP_141173067.1 | hypothetical protein | - |
| VOI39_RS03260 (PSTU1396_03330) | - | 758640..758966 (+) | 327 | WP_141173066.1 | plasmid-related protein | - |
| VOI39_RS03265 (PSTU1396_03335) | - | 758982..759401 (+) | 420 | WP_141173065.1 | single-stranded DNA-binding protein | - |
| VOI39_RS03270 (PSTU1396_03340) | bet | 759481..760299 (+) | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| VOI39_RS03275 (PSTU1396_03345) | - | 760381..760524 (+) | 144 | WP_164456985.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 224 a.a. Molecular weight: 26210.21 Da Isoelectric Point: 7.3260
>NTDB_id=1162433 VOI39_RS03250 WP_141173068.1 756884..757558(-) (ideA) [Providencia stuartii strain PS13962019BGR isolate PS13962019]
MNRTNFLVTFLIALFALPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYSNDGAIDAASCGYEPRKQPKQGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCERNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEITRDNRIKALQGNKNHHIK
MNRTNFLVTFLIALFALPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYSNDGAIDAASCGYEPRKQPKQGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCERNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRAYGQCDFEVDFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEITRDNRIKALQGNKNHHIK
Nucleotide
Download Length: 675 bp
>NTDB_id=1162433 VOI39_RS03250 WP_141173068.1 756884..757558(-) (ideA) [Providencia stuartii strain PS13962019BGR isolate PS13962019]
ATGAATAGAACTAATTTTCTCGTTACTTTCTTGATAGCGTTGTTCGCGCTACCTGCATTTGCAGAACACCCAACATCGTT
CAGTCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAAAGTACGTTTTACTGTGGATGTAGCTATAGCAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACAAGGTGAACGCTTAGAGTGGGAGCAT
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGTGAAAGGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGAGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATCCCGAACGAACCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAACTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGATGAATGGGAAATTACACGAGACAATCGAATTAAAG
CCTTACAAGGCAATAAAAACCACCATATAAAATAG
ATGAATAGAACTAATTTTCTCGTTACTTTCTTGATAGCGTTGTTCGCGCTACCTGCATTTGCAGAACACCCAACATCGTT
CAGTCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAAAGTACGTTTTACTGTGGATGTAGCTATAGCAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACAAGGTGAACGCTTAGAGTGGGAGCAT
GTTGTCTCAGCATGGGAAATTGGCCATCAACGCCAATGCTGGCAAAACGGTGGACGTCGGAACTGTGAAAGGAATGATCC
TGAGTTTTCTAAAATGGTTTCGGATCTCCATAACCTCGTACCATCAGTAGGAGAGCTCAACGGGGATAGATCAAATTTTC
GATTTGGCATGATCCCGAACGAACCAAGGGCCTATGGTCAATGTGATTTCGAAGTTGATTTCAAAGACCGCCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATTTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAACTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGATGAATGGGAAATTACACGAGACAATCGAATTAAAG
CCTTACAAGGCAATAAAAACCACCATATAAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ideA | Vibrio cholerae O1 str. 2010EL-1786 |
92.825 |
99.554 |
0.924 |
| dns | Vibrio parahaemolyticus RIMD 2210633 |
52.655 |
100 |
0.531 |
| dns | Aliivibrio fischeri ES114 |
51.316 |
100 |
0.522 |
| dns | Vibrio cholerae strain A1552 |
51.802 |
99.107 |
0.513 |
| dns | Campylobacter jejuni RM1221 |
37.054 |
100 |
0.371 |