Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AACH22_RS27235 Genome accession   NZ_OY970400
Coordinates   5631103..5631630 (-) Length   175 a.a.
NCBI ID   WP_034316149.1    Uniprot ID   A0A9W4KK92
Organism   Peribacillus frigoritolerans isolate BFRIG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5626103..5636630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH22_RS27215 (BFRIG_05507) rplI 5627174..5627623 (-) 450 WP_034316140.1 50S ribosomal protein L9 -
  AACH22_RS27220 (BFRIG_05508) - 5627620..5629590 (-) 1971 WP_034316142.1 DHH family phosphoesterase -
  AACH22_RS27225 (BFRIG_05509) - 5629632..5630579 (-) 948 WP_048687977.1 YybS family protein -
  AACH22_RS27230 (BFRIG_05510) rpsR 5630816..5631055 (-) 240 WP_034316147.1 30S ribosomal protein S18 -
  AACH22_RS27235 (BFRIG_05511) ssbA 5631103..5631630 (-) 528 WP_034316149.1 single-stranded DNA-binding protein Machinery gene
  AACH22_RS27240 (BFRIG_05512) rpsF 5631700..5631984 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  AACH22_RS27245 (BFRIG_05513) ychF 5632179..5633279 (-) 1101 WP_034316156.1 redox-regulated ATPase YchF -
  AACH22_RS27250 (BFRIG_05514) - 5633450..5633647 (-) 198 WP_048687975.1 DUF951 family protein -
  AACH22_RS27255 (BFRIG_05515) - 5633667..5634503 (-) 837 WP_048687973.1 mechanosensitive ion channel family protein -
  AACH22_RS27260 (BFRIG_05516) yyaC 5634875..5635510 (+) 636 WP_048687971.1 spore protease YyaC -
  AACH22_RS27265 (BFRIG_05517) - 5635560..5636261 (-) 702 WP_072272172.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19418.10 Da        Isoelectric Point: 4.8282

>NTDB_id=1162259 AACH22_RS27235 WP_034316149.1 5631103..5631630(-) (ssbA) [Peribacillus frigoritolerans isolate BFRIG]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYGNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPFA
NDGKTIDISDDDLPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1162259 AACH22_RS27235 WP_034316149.1 5631103..5631630(-) (ssbA) [Peribacillus frigoritolerans isolate BFRIG]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTAGTTTTACGAATCAGCAAGGTGAACGTGAAGCGGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGGGGTCAAAGAAGTTATGGCAATAATAACGGAAATGACA
ACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCATTTGCA
AATGACGGTAAGACAATCGACATTTCAGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.101

100

0.703
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.566
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.383
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.264

60.571

0.377

Multiple sequence alignment