Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACLMBQ_RS19210 | Genome accession | NZ_OY829390 |
| Coordinates | 4174787..4175314 (+) | Length | 175 a.a. |
| NCBI ID | WP_138441852.1 | Uniprot ID | - |
| Organism | MAG: Marinobacter alexandrii isolate 78648b50-2abc-418f-b92f-8dc6f39ea282 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4169787..4180314
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLMBQ_RS19195 (U5725_RS19195) | rplQ | 4169859..4170257 (+) | 399 | WP_041341481.1 | 50S ribosomal protein L17 | - |
| ACLMBQ_RS19200 (U5725_RS19200) | uvrA | 4170350..4173172 (-) | 2823 | WP_322002400.1 | excinuclease ABC subunit UvrA | - |
| ACLMBQ_RS19205 (U5725_RS19205) | - | 4173358..4174728 (+) | 1371 | WP_247844843.1 | MFS transporter | - |
| ACLMBQ_RS19210 (U5725_RS19210) | ssb | 4174787..4175314 (+) | 528 | WP_138441852.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLMBQ_RS19215 (U5725_RS19215) | - | 4175514..4176446 (+) | 933 | WP_247844844.1 | biogenesis protein MshI | - |
| ACLMBQ_RS19220 (U5725_RS19220) | - | 4176443..4177048 (+) | 606 | WP_247844845.1 | PilN domain-containing protein | - |
| ACLMBQ_RS19225 (U5725_RS19225) | - | 4177048..4177749 (+) | 702 | WP_273428685.1 | MSHA biogenesis protein MshJ | - |
| ACLMBQ_RS19230 (U5725_RS19230) | - | 4177751..4178098 (+) | 348 | WP_322002403.1 | hypothetical protein | - |
| ACLMBQ_RS19235 (U5725_RS19235) | mshL | 4178116..4179825 (+) | 1710 | WP_322002405.1 | pilus (MSHA type) biogenesis protein MshL | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19366.41 Da Isoelectric Point: 4.9464
>NTDB_id=1162090 ACLMBQ_RS19210 WP_138441852.1 4174787..4175314(+) (ssb) [MAG: Marinobacter alexandrii isolate 78648b50-2abc-418f-b92f-8dc6f39ea282]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRIVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGEGGMNQGAPAGRPQQSNYNAPAQQQNNNPPPQQQSGGYNQPSQG
SMPEPVDDFDDDIPF
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQMVPKTEWHRIVLFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGEGGMNQGAPAGRPQQSNYNAPAQQQNNNPPPQQQSGGYNQPSQG
SMPEPVDDFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=1162090 ACLMBQ_RS19210 WP_138441852.1 4174787..4175314(+) (ssb) [MAG: Marinobacter alexandrii isolate 78648b50-2abc-418f-b92f-8dc6f39ea282]
ATGGCACGAGGCGTAAACAAAGTCATTCTTATCGGGAACCTTGGTCAGGATCCGGATACCCGTTATACCCCGAACGGCAA
TGCGGTGGTAAACCTGAACCTTGCCACTGACGAGAGCTACAAGGATCGTCAGACCGGGCAAATGGTGCCGAAAACCGAGT
GGCACCGCATTGTGCTGTTCGGAAAAGTGGCGGAAGTGGCGGGTCAGTACCTGCGCAAGGGTTCCAAGGTCTATATTGAA
GGCAAGCTGCAAACCCGCAAGTGGCAGAACAAGGAAGGCCAGGATGTTTACACCACAGAAGTGGTGGTGGACATCAATGG
CCAGATGCAGATGCTGGACAGCCGCGGTGAAGGCGGCATGAACCAGGGTGCGCCCGCGGGACGCCCGCAGCAGTCCAATT
ACAACGCACCGGCGCAGCAGCAGAACAACAATCCGCCGCCACAGCAGCAGTCGGGTGGCTACAACCAGCCCTCTCAGGGA
AGCATGCCTGAGCCGGTGGATGACTTTGATGATGACATCCCATTCTAA
ATGGCACGAGGCGTAAACAAAGTCATTCTTATCGGGAACCTTGGTCAGGATCCGGATACCCGTTATACCCCGAACGGCAA
TGCGGTGGTAAACCTGAACCTTGCCACTGACGAGAGCTACAAGGATCGTCAGACCGGGCAAATGGTGCCGAAAACCGAGT
GGCACCGCATTGTGCTGTTCGGAAAAGTGGCGGAAGTGGCGGGTCAGTACCTGCGCAAGGGTTCCAAGGTCTATATTGAA
GGCAAGCTGCAAACCCGCAAGTGGCAGAACAAGGAAGGCCAGGATGTTTACACCACAGAAGTGGTGGTGGACATCAATGG
CCAGATGCAGATGCTGGACAGCCGCGGTGAAGGCGGCATGAACCAGGGTGCGCCCGCGGGACGCCCGCAGCAGTCCAATT
ACAACGCACCGGCGCAGCAGCAGAACAACAATCCGCCGCCACAGCAGCAGTCGGGTGGCTACAACCAGCCCTCTCAGGGA
AGCATGCCTGAGCCGGTGGATGACTTTGATGATGACATCCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.522 |
100 |
0.594 |
| ssb | Glaesserella parasuis strain SC1401 |
53.191 |
100 |
0.571 |
| ssb | Neisseria gonorrhoeae MS11 |
45.198 |
100 |
0.457 |
| ssb | Neisseria meningitidis MC58 |
45.198 |
100 |
0.457 |