Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   U9J37_RS05750 Genome accession   NZ_OY808997
Coordinates   1301671..1302258 (-) Length   195 a.a.
NCBI ID   WP_005474063.1    Uniprot ID   A0A0A5HYC9
Organism   Vibrio sp. 16 isolate VDT1     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1296671..1307258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS05730 (VDT1_1162) - 1296984..1298252 (-) 1269 WP_005474088.1 DUF945 family protein -
  U9J37_RS05735 (VDT1_1163) - 1298423..1300348 (+) 1926 WP_322413938.1 ATP-binding protein -
  U9J37_RS05740 (VDT1_1164) - 1300369..1300866 (+) 498 WP_005474065.1 response regulator -
  U9J37_RS05745 (VDT1_1165) - 1301031..1301579 (+) 549 WP_005474055.1 hypothetical protein -
  U9J37_RS05750 (VDT1_1166) tfoX 1301671..1302258 (-) 588 WP_005474063.1 TfoX/Sxy family DNA transformation protein Regulator
  U9J37_RS05755 (VDT1_1167) - 1302615..1303535 (+) 921 WP_005474131.1 HDOD domain-containing protein -
  U9J37_RS05760 (VDT1_1168) - 1303551..1304456 (+) 906 WP_005474108.1 lysine exporter LysO family protein -
  U9J37_RS05765 (VDT1_1169) - 1304597..1305109 (+) 513 WP_005474104.1 hypothetical protein -
  U9J37_RS05770 (VDT1_1170) panP 1305251..1306897 (+) 1647 WP_005474061.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22504.85 Da        Isoelectric Point: 8.9228

>NTDB_id=1161968 U9J37_RS05750 WP_005474063.1 1301671..1302258(-) (tfoX) [Vibrio sp. 16 isolate VDT1]
MDMTEQHFIQYVNKFGMFQKRSMFGGTGLFREDAMFALLSANKIFIRGGDHLDKEFSQLGCEKYRHVKKQTTATVNYYDI
TELFESDSDRLDDLVKQSIDYSVSERQFKRSAANRRLRDLPNMQLTLERMVKKAGIDDVDTFMELGAPAVFAKVKQAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKRQLLASCP

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1161968 U9J37_RS05750 WP_005474063.1 1301671..1302258(-) (tfoX) [Vibrio sp. 16 isolate VDT1]
ATGGATATGACAGAGCAACATTTTATTCAATATGTAAACAAGTTTGGCATGTTTCAAAAGCGTTCGATGTTTGGTGGAAC
AGGATTGTTCAGGGAAGACGCCATGTTCGCTTTACTTAGCGCAAACAAGATCTTTATCCGTGGTGGGGACCATTTAGATA
AAGAGTTTTCTCAGCTTGGTTGCGAGAAATATCGCCATGTTAAGAAACAGACAACGGCGACCGTAAATTATTATGATATT
ACGGAGCTGTTTGAATCGGACAGCGATCGTTTGGATGACCTTGTTAAGCAATCTATCGATTACTCGGTTTCTGAGCGACA
GTTTAAACGTTCTGCGGCAAATCGTAGACTGCGAGACTTGCCAAACATGCAGCTCACTTTAGAGCGTATGGTAAAAAAAG
CAGGCATCGATGATGTTGATACGTTTATGGAACTAGGTGCTCCGGCGGTATTTGCTAAAGTTAAGCAAGCCTACGGAAGC
GATGTAGACGTTAAGCTACTTTGGAAGTTTGCCGGTGCTATCGATGGTATTCACTGGAAATTAATCCAAGAGCCACGCAA
ACGCCAGCTATTGGCAAGCTGCCCATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-100)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A5HYC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.479

98.462

0.733
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.479

98.462

0.733
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.479

98.462

0.733
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.479

98.462

0.733
  tfoX Vibrio cholerae strain A1552

74.479

98.462

0.733
  tfoX Vibrio campbellii strain DS40M4

72.165

99.487

0.718
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.619

99.487

0.703
  tfoX Aliivibrio fischeri ES114

59.686

97.949

0.585

Multiple sequence alignment