Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   U9J37_RS04510 Genome accession   NZ_OY808997
Coordinates   1021631..1023100 (+) Length   489 a.a.
NCBI ID   WP_005473855.1    Uniprot ID   -
Organism   Vibrio sp. 16 isolate VDT1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016631..1028100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9J37_RS04495 (VDT1_0914) - 1017770..1018465 (+) 696 WP_005473835.1 chromosome partitioning ATPase -
  U9J37_RS04500 (VDT1_0915) - 1018474..1019277 (+) 804 WP_043887156.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  U9J37_RS04505 (VDT1_0916) - 1019287..1021611 (+) 2325 WP_005473781.1 response regulator -
  U9J37_RS04510 (VDT1_0917) luxO 1021631..1023100 (+) 1470 WP_005473855.1 sigma-54-dependent transcriptional regulator Regulator
  U9J37_RS04515 (VDT1_0918) - 1023078..1024097 (+) 1020 WP_043887157.1 glycosyltransferase family 4 protein -
  U9J37_RS04520 (VDT1_0919) - 1024245..1025453 (+) 1209 WP_005473820.1 glycosyltransferase -
  U9J37_RS04525 (VDT1_0920) - 1025446..1026618 (+) 1173 WP_005473814.1 glycosyltransferase family 4 protein -
  U9J37_RS04530 (VDT1_0921) - 1026629..1028050 (+) 1422 WP_005473815.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 489 a.a.        Molecular weight: 54957.60 Da        Isoelectric Point: 5.1966

>NTDB_id=1161967 U9J37_RS04510 WP_005473855.1 1021631..1023100(+) (luxO) [Vibrio sp. 16 isolate VDT1]
MKPKVLLIEDSTSLAILYKQYIKDEPYDLFHVETGREAIAFIERNVPQLVILDLKLPDMDGEDILDWINEQQIPTSVIVA
TAHGSVNVAVSLVQKGAKDFLEKPINADRLKTSINLHLQQVKLEHLVEDIETKFDRNRFHGFIGSSLPMQGVYKIIDSVA
PTTASVFIVGESGTGKEVCAEAIHKESKRSDKPFVAINCGAIPKDLMESEIFGHVKGAFTGATTDRKGAASQAHGGTLFL
DELCEMDLEMQKKLLRFLQTGTFTPLGGSREVKVDVRIICATNREPLVEVEEGRFREDLYYRVHVVPVDMPPLRERGNDI
VTLANHFLKLYAKEDGKQFRAINRDAETLLKRYRWPGNVRQLQNIIRNIVVLNDDTKLTVDHLPEQVRQSTAAKNNRTAP
PPTPLSVEASPAEPIIDEIESTYTPSQAADNPPTHIRPMWQIEREAIQQAIDYCDGNVLNAAVLLELSPSTVYRKKQAWE
AEDEQQYTD

Nucleotide


Download         Length: 1470 bp        

>NTDB_id=1161967 U9J37_RS04510 WP_005473855.1 1021631..1023100(+) (luxO) [Vibrio sp. 16 isolate VDT1]
ATGAAACCAAAAGTATTACTTATTGAAGACTCAACGTCGCTCGCTATTTTGTACAAGCAGTACATCAAAGATGAACCCTA
TGACCTGTTCCATGTTGAAACGGGTCGCGAAGCCATCGCCTTTATTGAACGAAATGTTCCTCAGCTCGTTATTCTCGATC
TTAAGCTGCCAGACATGGATGGCGAAGACATCTTGGATTGGATCAACGAACAGCAAATCCCAACTTCCGTGATTGTCGCT
ACCGCACATGGTTCAGTAAATGTCGCCGTTAGCCTAGTGCAAAAAGGGGCGAAAGACTTCCTTGAAAAACCCATCAATGC
AGACCGCCTGAAGACTTCCATCAACCTTCATTTGCAACAAGTGAAACTCGAGCACTTGGTGGAAGATATAGAAACGAAAT
TTGACCGAAACCGTTTCCACGGCTTTATCGGTTCCAGTTTGCCGATGCAAGGTGTTTACAAAATTATCGACTCGGTCGCA
CCGACCACCGCGAGTGTTTTCATCGTTGGTGAAAGTGGCACAGGTAAAGAGGTGTGCGCGGAAGCCATTCACAAAGAGAG
CAAACGATCAGACAAACCGTTCGTTGCAATTAACTGCGGGGCGATCCCGAAAGATCTGATGGAAAGTGAAATTTTCGGCC
ATGTAAAAGGCGCATTCACGGGCGCAACGACAGACCGAAAAGGCGCAGCATCACAAGCCCACGGCGGTACGTTATTTTTA
GACGAGCTTTGCGAAATGGATTTGGAGATGCAGAAGAAGTTACTGCGTTTTCTTCAAACTGGGACGTTTACGCCACTGGG
TGGTAGTCGAGAGGTCAAAGTGGATGTCCGCATCATTTGCGCCACCAACCGAGAGCCCTTAGTTGAAGTTGAAGAAGGAC
GCTTTCGTGAAGACCTCTATTACCGAGTCCATGTCGTCCCTGTCGACATGCCACCACTGCGCGAACGCGGTAACGACATT
GTCACGCTCGCTAACCATTTCTTGAAGCTGTACGCTAAAGAAGATGGCAAACAATTTAGAGCAATCAATCGCGATGCGGA
AACCTTGCTCAAACGTTACCGTTGGCCAGGCAATGTTAGGCAACTGCAGAACATCATCCGCAATATTGTGGTATTAAATG
ATGATACCAAGCTCACGGTTGATCATTTGCCAGAGCAGGTTCGCCAATCCACAGCCGCTAAAAATAACAGAACTGCGCCA
CCACCGACGCCATTGTCTGTTGAAGCGTCCCCTGCTGAACCGATCATCGATGAAATAGAGAGCACGTATACCCCATCGCA
AGCTGCAGACAATCCGCCAACGCATATTCGTCCAATGTGGCAGATTGAACGAGAAGCCATTCAACAAGCCATTGATTATT
GCGATGGCAATGTTCTCAATGCAGCAGTTCTTTTGGAGTTAAGCCCATCGACGGTTTACCGCAAGAAGCAAGCATGGGAA
GCAGAAGATGAGCAACAATACACCGACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(439-475)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.74

96.728

0.491
  pilR Acinetobacter baumannii strain A118

36.105

100

0.364
  pilR Pseudomonas aeruginosa PAK

36.952

97.955

0.362

Multiple sequence alignment