Detailed information NTG1161929

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ACKPCS_RS09850
• Genome accession: NZ_OY782661
• Coordinates: 2162039..2164252 (-)
• Length: 737 a.a.
• NCBI ID: WP_319528587.1
• Uniprot ID: -
• Organism: MAG: Pseudomonas laurentiana isolate a2b1eb27-3f7a-4377-910e-1eaf3a1a8d52
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2157039..2169252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKPCS_RS09815 (SLU14_RS09740)	murB	2157429..2158448 (-)	1020	WP_163934872.1	UDP-N-acetylmuramate dehydrogenase	-
ACKPCS_RS09820 (SLU14_RS09745)	-	2158445..2158909 (-)	465	WP_319528585.1	low molecular weight protein-tyrosine-phosphatase	-
ACKPCS_RS09825 (SLU14_RS09750)	kdsB	2158909..2159673 (-)	765	WP_163934867.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACKPCS_RS09830 (SLU14_RS09755)	-	2159670..2159855 (-)	186	WP_065761464.1	Trm112 family protein	-
ACKPCS_RS09835 (SLU14_RS09760)	lpxK	2159894..2160904 (-)	1011	WP_319528586.1	tetraacyldisaccharide 4'-kinase	-
ACKPCS_RS09840 (SLU14_RS09765)	-	2160904..2161335 (-)	432	WP_163934864.1	biopolymer transporter ExbD	-
ACKPCS_RS09845 (SLU14_RS09770)	exbB	2161332..2161967 (-)	636	WP_163934876.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ACKPCS_RS09850 (SLU14_RS09775)	comA	2162039..2164252 (-)	2214	WP_319528587.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACKPCS_RS09855 (SLU14_RS09780)	-	2164394..2164933 (+)	540	WP_163934861.1	DUF2062 domain-containing protein	-
ACKPCS_RS09860 (SLU14_RS09785)	-	2164901..2165680 (-)	780	WP_102053571.1	ABC transporter permease	-
ACKPCS_RS09865 (SLU14_RS09790)	-	2165677..2166609 (-)	933	WP_163934859.1	ABC transporter ATP-binding protein	-
ACKPCS_RS09870 (SLU14_RS09795)	-	2166733..2167356 (-)	624	WP_163934856.1	glutathione S-transferase family protein	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 80249.73 Da
• Isoelectric Point: 9.3613

>NTDB_id=1161929 ACKPCS_RS09850 WP_319528587.1 2162039..2164252(-) (comA) [MAG: Pseudomonas laurentiana isolate a2b1eb27-3f7a-4377-910e-1eaf3a1a8d52]
MRTGMVALALGLLCLRWLPALPSVGVLLALILLGLCCLPSRARPLGCFLLGFCWGCLSAQDALDDRLPPALDGRTLWVEG
RVVGLPEHHAQFVRFEFAEASSRRAQLPKRLRLSWYGGPPINSGERWRLAVSLKRPLGLLNPHIADQEMTLLARRIGATG
SVKAGERLSSANMVWRDGIRQRLMAVDAQGREGVLAALVLGDGSGLTRADWQALQATGTVHLLVISGQHIGLLAGLVYAL
IAALARFGLWPRAVPWLPAACVLALAAALAYGMLAGFQVPVRRACIMLAVVLLWRLRFRHLGVMLPWLLALNAVLLIEPL
ASLQPGFWLSFGAVAILIFTFSGRLGAWRAWQAWTRAQWMIALGLLPFLLVLGLPVSLSAPLVNLLAVPWISVLVLPVAL
AGTLLLDVPVLGACLLWLAGGLLDVLFRVLGQVADWQPAWVPAALPLWAWLLVCLGVFLVLLPKGLPMRILGWPAVLLAV
FAPRDEVPEGQLEVWQLDVGQGQAFILRTRHRALLYDAGPAMGEVDLGARIVLPTLLKLGVSTLDLMLLSHADADHAGGA
LAVKRGLPVARVLAGEVQRLPQALQAQPCVAGEHWEWDGVRFSVWQWHEAGDSNQGSCVLLVEASGERLLLTGDIDAEGE
RAWLQATAEPRVDWLQAPHHGSRSASGQAFLEALAPRGVLISRGRYNAFGHPHPEVMARYRHLGIVPYDSALEGAVYWRL
GSFGEPQGMRRQQRFWR

Nucleotide

• Length: 2214 bp

>NTDB_id=1161929 ACKPCS_RS09850 WP_319528587.1 2162039..2164252(-) (comA) [MAG: Pseudomonas laurentiana isolate a2b1eb27-3f7a-4377-910e-1eaf3a1a8d52]
ATGCGCACAGGGATGGTTGCGCTTGCGCTCGGGCTGTTATGCCTGCGATGGCTTCCTGCGCTGCCTTCGGTCGGGGTGTT
GCTTGCGCTGATACTGCTTGGGCTGTGCTGTCTGCCGTCGCGGGCCCGTCCCTTGGGGTGTTTCCTGCTGGGTTTTTGCT
GGGGCTGTCTATCGGCGCAAGACGCGCTGGATGATCGCTTGCCGCCAGCGCTGGACGGTCGCACATTGTGGGTGGAGGGA
CGGGTGGTTGGCTTGCCTGAGCACCATGCTCAGTTCGTGCGCTTTGAGTTTGCCGAGGCCAGCTCACGCCGCGCCCAGTT
GCCGAAGCGCTTGCGTCTGAGCTGGTATGGCGGGCCACCGATCAACAGTGGAGAGCGCTGGCGGCTTGCCGTCAGCCTCA
AGCGCCCGCTCGGTCTGCTCAACCCCCATATTGCCGATCAGGAAATGACCCTGTTGGCGCGCCGTATCGGTGCCACCGGT
AGCGTCAAGGCTGGTGAGCGCTTGTCGTCAGCGAACATGGTCTGGCGTGACGGTATCCGGCAACGGCTGATGGCGGTCGA
TGCTCAAGGGCGCGAGGGCGTGCTGGCTGCCCTGGTACTTGGCGATGGCAGTGGCCTGACACGGGCGGACTGGCAAGCGT
TGCAGGCGACTGGCACGGTGCACCTGTTGGTGATTTCAGGGCAGCACATCGGTCTGCTGGCGGGACTGGTCTATGCCCTG
ATAGCCGCGCTGGCGCGTTTCGGGCTTTGGCCGCGCGCAGTGCCCTGGTTGCCTGCCGCGTGTGTTCTGGCGCTCGCAGC
GGCGTTGGCGTACGGCATGCTCGCCGGGTTTCAGGTGCCGGTGCGTCGGGCCTGCATCATGTTGGCGGTGGTGTTGCTCT
GGCGTCTGCGTTTTCGTCATCTGGGGGTCATGCTGCCGTGGCTGCTGGCGCTCAATGCGGTATTGCTGATTGAACCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGTTGTCCTTCGGTGCGGTAGCCATCCTGATCTTCACATTCAGCGGGCGGCTGGGCGC
CTGGCGTGCCTGGCAGGCGTGGACCCGGGCGCAATGGATGATTGCCCTGGGGTTGCTTCCGTTCTTGCTGGTGCTCGGAT
TGCCCGTGAGCCTCAGTGCGCCGCTGGTCAATCTGTTGGCGGTGCCCTGGATCAGCGTGCTGGTGTTGCCGGTCGCCTTG
GCGGGGACGTTACTGCTTGATGTGCCGGTACTCGGTGCATGCTTGTTGTGGTTGGCGGGTGGTTTGCTGGATGTACTGTT
TCGCGTGCTCGGGCAGGTCGCTGATTGGCAGCCAGCCTGGGTGCCGGCGGCCTTGCCGTTATGGGCATGGCTGCTGGTCT
GCCTTGGGGTGTTCCTGGTGTTATTGCCCAAAGGGTTGCCGATGCGGATATTAGGCTGGCCCGCTGTGCTGCTGGCGGTC
TTTGCCCCGCGTGATGAGGTGCCGGAGGGGCAGTTGGAGGTCTGGCAGCTGGATGTAGGGCAGGGGCAGGCCTTTATTCT
GCGTACCCGTCACCGCGCCCTGTTGTATGACGCGGGACCGGCCATGGGAGAGGTCGATCTGGGGGCGCGCATCGTACTGC
CTACGCTCCTGAAGCTGGGTGTAAGCACACTCGACCTGATGCTGCTTAGTCATGCGGATGCCGACCACGCCGGAGGCGCG
CTGGCGGTGAAGCGTGGTTTGCCGGTTGCACGTGTACTGGCCGGTGAGGTGCAGAGGTTGCCCCAGGCCTTGCAGGCCCA
GCCCTGTGTTGCCGGTGAACACTGGGAGTGGGATGGGGTACGGTTTTCTGTGTGGCAATGGCACGAGGCAGGCGACAGCA
ATCAAGGCTCATGCGTGTTATTGGTCGAGGCTTCCGGTGAGCGATTGTTGCTGACCGGAGATATCGATGCGGAAGGTGAG
CGGGCTTGGCTGCAGGCAACGGCAGAGCCCCGCGTCGATTGGTTGCAAGCCCCTCATCATGGCAGTCGAAGCGCCTCTGG
CCAGGCATTTCTTGAGGCGTTGGCACCCAGGGGCGTCCTGATTTCACGCGGCCGTTACAACGCGTTTGGTCATCCCCATC
CCGAGGTGATGGCGCGCTACAGACACTTGGGTATTGTCCCCTATGACAGTGCGTTGGAAGGCGCGGTCTATTGGCGCCTG
GGGAGTTTCGGCGAGCCTCAGGGGATGCGTCGCCAGCAACGCTTCTGGCGCTAG

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (19-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-678)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.142	97.422	0.596
comA	Ralstonia pseudosolanacearum GMI1000	35.171	100	0.364