Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACKPCS_RS09845 Genome accession   NZ_OY782661
Coordinates   2161332..2161967 (-) Length   211 a.a.
NCBI ID   WP_163934876.1    Uniprot ID   A0A6I5RQS3
Organism   MAG: Pseudomonas laurentiana isolate a2b1eb27-3f7a-4377-910e-1eaf3a1a8d52     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2156332..2166967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPCS_RS09815 (SLU14_RS09740) murB 2157429..2158448 (-) 1020 WP_163934872.1 UDP-N-acetylmuramate dehydrogenase -
  ACKPCS_RS09820 (SLU14_RS09745) - 2158445..2158909 (-) 465 WP_319528585.1 low molecular weight protein-tyrosine-phosphatase -
  ACKPCS_RS09825 (SLU14_RS09750) kdsB 2158909..2159673 (-) 765 WP_163934867.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACKPCS_RS09830 (SLU14_RS09755) - 2159670..2159855 (-) 186 WP_065761464.1 Trm112 family protein -
  ACKPCS_RS09835 (SLU14_RS09760) lpxK 2159894..2160904 (-) 1011 WP_319528586.1 tetraacyldisaccharide 4'-kinase -
  ACKPCS_RS09840 (SLU14_RS09765) - 2160904..2161335 (-) 432 WP_163934864.1 biopolymer transporter ExbD -
  ACKPCS_RS09845 (SLU14_RS09770) exbB 2161332..2161967 (-) 636 WP_163934876.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACKPCS_RS09850 (SLU14_RS09775) comA 2162039..2164252 (-) 2214 WP_319528587.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACKPCS_RS09855 (SLU14_RS09780) - 2164394..2164933 (+) 540 WP_163934861.1 DUF2062 domain-containing protein -
  ACKPCS_RS09860 (SLU14_RS09785) - 2164901..2165680 (-) 780 WP_102053571.1 ABC transporter permease -
  ACKPCS_RS09865 (SLU14_RS09790) - 2165677..2166609 (-) 933 WP_163934859.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22885.97 Da        Isoelectric Point: 6.8759

>NTDB_id=1161928 ACKPCS_RS09845 WP_163934876.1 2161332..2161967(-) (exbB) [MAG: Pseudomonas laurentiana isolate a2b1eb27-3f7a-4377-910e-1eaf3a1a8d52]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWRWIQDKQLNSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMSANASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1161928 ACKPCS_RS09845 WP_163934876.1 2161332..2161967(-) (exbB) [MAG: Pseudomonas laurentiana isolate a2b1eb27-3f7a-4377-910e-1eaf3a1a8d52]
GTGTGGGAATTGGTCAAGTCTGGCGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACCCCGCCGCACCTGCTGGGTCAGGTCTGGCGCTGGATTCAGGACA
AGCAACTCAACAGCGATAAACTCAAGGCCCTGCGTGCCGATTCGCCACTGGGCGAGATCCTCGCGGCGGGCCTGGCGAAC
TCGCGGCATGGTCGCGAAATCATGAAAGAGTGCATTGAAGAAGCCGCTGCCCGGGTCATCCACGAGCTGGAACGCTATAT
CAATGCACTGGGCACCATTGCTGCCATGGCACCACTGCTTGGCCTGCTGGGTACGGTGTTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCACGGGGATGTCGGCTAACGCCTCGGTACTGGCCGGCGGTATTTCCAAGGCGTTGATCACCACGGCA
GCAGGCTTGATGGTCGGTATCCCTTCGGTCTTCTTCCACCGTTTCCTGCAGCGGCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAGGCAATCAAGCTGGTCGAAGTGGTCCAGGGTGACCGTGATGTCGACCTGGCTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I5RQS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment