Detailed information NTG1161909

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ACLMBU_RS12020
• Genome accession: NZ_OY782519
• Coordinates: 2552869..2555082 (+)
• Length: 737 a.a.
• NCBI ID: WP_321373608.1
• Uniprot ID: -
• Organism: MAG: Pseudomonas extremaustralis isolate 6328a48c-d287-402b-9a22-4be284e47c5f
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2547869..2560082

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLMBU_RS12005 (U3A02_RS12015)	-	2550117..2550845 (+)	729	WP_262050388.1	response regulator transcription factor	-
ACLMBU_RS12010 (U3A02_RS12020)	-	2550832..2552202 (+)	1371	WP_321373601.1	sensor histidine kinase	-
ACLMBU_RS12015 (U3A02_RS12025)	-	2552206..2552721 (-)	516	WP_042947820.1	DUF2062 domain-containing protein	-
ACLMBU_RS12020 (U3A02_RS12030)	comA	2552869..2555082 (+)	2214	WP_321373608.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACLMBU_RS12025 (U3A02_RS12035)	exbB	2555170..2555805 (+)	636	WP_010567804.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ACLMBU_RS12030 (U3A02_RS12040)	-	2555802..2556230 (+)	429	WP_010567805.1	ExbD/TolR family protein	-
ACLMBU_RS12035 (U3A02_RS12045)	lpxK	2556230..2557240 (+)	1011	WP_321373613.1	tetraacyldisaccharide 4'-kinase	-
ACLMBU_RS12040 (U3A02_RS12050)	-	2557264..2557449 (+)	186	WP_003174668.1	Trm112 family protein	-
ACLMBU_RS12045 (U3A02_RS12055)	kdsB	2557446..2558210 (+)	765	WP_321144111.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACLMBU_RS12050 (U3A02_RS12060)	-	2558210..2558674 (+)	465	WP_321144110.1	low molecular weight protein-tyrosine-phosphatase	-
ACLMBU_RS12055 (U3A02_RS12065)	murB	2558671..2559690 (+)	1020	WP_321373649.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 80221.28 Da
• Isoelectric Point: 10.6796

>NTDB_id=1161909 ACLMBU_RS12020 WP_321373608.1 2552869..2555082(+) (comA) [MAG: Pseudomonas extremaustralis isolate 6328a48c-d287-402b-9a22-4be284e47c5f]
MFALALGLLALRFLPALPSIGWLIAMPVVALMLLPFRTYPLAFFLLGLSWACFSAQSALNDRLKPALDGQTRWVEGWVTG
LPQRTGDGVRFELTDSRSRKTHLPERIRVFWRGGPEVRSGERWRLAIALKRPFGLLNFHGFDQEAWLLAQRIGATGSVKD
GERLAAARNAWRDNVRQRLMAVDARGREAGLAALVLGDGSGLAAEDWQVLQDTGTVHLLVISGQHIGLLAGLVYGLVAGL
ARYGCWPRAWPWLPWACGLAFAAALAYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNGVLMLEPLASLQ
PGFWLSFAAVAVLGLAFGGRLGPWSLWQAWTRPQWMIAIGLFPVLLVLGLPISLSAPLANLVAVPWISLVVLPLALLGTV
LLPLPFVGESLLWLAGGALDGLFIGLAWLAGLVPAWVPTEVAPVYWCISLLGAVLLLLPKGVPFRLLGWPMLLLAVFPPR
SLVPHGQVEVVQLDVGQGQALILRTRHHTLLYDAGPRSGAFDLGARVVLPSLRKLGVGTLDMMLLSHADADHAGGAVAIA
NGMPIKRVVGGETERLPTVLGTQPCSSGEQWRWDGVSFELWQWADAVAGNPKSCVLLVQANGERLLLTGDIDRAAEQALL
STPLAVPTDWLQAPHHGSRSSSSWAFLQRLTPKSVLISRGRGNAFGHPHQQVLERYRALGSQVYDSAEQGAVRLRLGAFA
PPVVARSQRRFWRERLP

Nucleotide

• Length: 2214 bp

>NTDB_id=1161909 ACLMBU_RS12020 WP_321373608.1 2552869..2555082(+) (comA) [MAG: Pseudomonas extremaustralis isolate 6328a48c-d287-402b-9a22-4be284e47c5f]
ATGTTTGCGCTTGCGCTAGGGCTGCTGGCCTTGCGTTTTTTACCGGCACTGCCGTCTATCGGCTGGCTGATAGCGATGCC
GGTGGTGGCGTTGATGCTGTTACCGTTTCGCACGTACCCGCTGGCGTTTTTCCTGCTGGGGCTGAGCTGGGCCTGCTTCA
GTGCACAATCGGCACTCAACGATCGCCTGAAGCCGGCATTGGACGGCCAGACACGCTGGGTGGAGGGGTGGGTCACCGGG
TTGCCGCAACGGACGGGCGATGGGGTGCGTTTTGAATTGACCGACAGCCGGTCGCGCAAGACACACTTGCCTGAACGCAT
TCGCGTGTTTTGGCGTGGCGGGCCAGAGGTGCGCAGCGGTGAGCGCTGGCGTCTGGCAATCGCTCTCAAACGTCCGTTCG
GGCTGCTTAATTTCCATGGTTTTGATCAGGAGGCCTGGCTGTTGGCCCAGCGCATCGGTGCCACGGGCTCGGTGAAGGAC
GGCGAGCGGCTGGCAGCGGCGCGTAACGCCTGGCGCGACAACGTCCGCCAGCGCCTGATGGCGGTGGATGCCCGAGGTCG
GGAGGCCGGGCTCGCGGCCCTGGTGTTGGGGGACGGATCGGGATTGGCCGCCGAAGATTGGCAAGTATTGCAGGACACCG
GCACCGTGCATTTGCTGGTGATTTCCGGCCAGCATATCGGCTTGTTGGCGGGGCTGGTCTATGGTCTGGTGGCTGGCCTG
GCGCGCTATGGATGCTGGCCTCGGGCCTGGCCGTGGCTGCCTTGGGCGTGTGGCCTGGCATTTGCCGCAGCGCTGGCCTA
CGGCCTGTTGGCCGGGTTCGGCGTGCCGGTGCAGCGCGCGTGCGTGATGGTGGGATTAGTGTTGCTGTGGCGGTTGCGTT
TTCGCCATCTGGGAATCTGGTGGCCATTGTTGCTGGCGCTCAATGGGGTGCTGATGCTGGAACCATTGGCCAGTTTGCAG
CCGGGCTTTTGGTTGTCCTTTGCGGCGGTGGCGGTGCTGGGTCTGGCGTTCGGTGGGCGGCTCGGGCCTTGGAGTTTGTG
GCAAGCGTGGACCCGTCCGCAGTGGATGATCGCTATTGGCCTGTTTCCTGTGCTGCTGGTGCTCGGTCTACCCATCAGCC
TGAGTGCGCCGCTGGCCAATCTGGTTGCCGTGCCGTGGATCAGTCTGGTGGTGCTGCCATTGGCGTTGCTGGGGACTGTA
CTGCTGCCGCTGCCTTTCGTGGGGGAGAGCTTGTTGTGGTTGGCGGGTGGTGCGCTGGATGGATTGTTCATAGGCCTGGC
GTGGCTCGCCGGGCTGGTACCGGCGTGGGTGCCGACCGAAGTGGCGCCGGTTTACTGGTGCATCAGCCTGCTGGGCGCGG
TGCTGTTGCTGTTACCCAAAGGGGTGCCGTTTCGCTTGCTGGGCTGGCCGATGCTGTTGCTGGCAGTGTTTCCCCCGCGA
TCGCTGGTACCCCATGGACAGGTGGAAGTCGTGCAATTGGATGTCGGGCAGGGACAAGCGTTGATCCTGCGCACGCGTCA
CCACACGCTGCTCTACGATGCCGGCCCGCGTTCGGGAGCGTTCGACTTGGGCGCGCGGGTGGTGCTGCCGTCGTTGCGAA
AACTCGGGGTCGGGACCTTGGACATGATGCTGCTCAGCCACGCCGATGCGGATCATGCCGGCGGCGCGGTGGCGATCGCC
AATGGCATGCCGATCAAGCGTGTCGTTGGCGGGGAAACCGAGAGGTTGCCGACGGTTCTCGGCACCCAGCCGTGCAGCAG
CGGTGAGCAATGGCGGTGGGACGGTGTGTCATTCGAACTCTGGCAGTGGGCTGACGCCGTTGCCGGCAATCCGAAATCCT
GCGTGCTGCTGGTGCAGGCTAATGGTGAGCGCCTGCTGCTGACCGGCGATATCGACCGTGCGGCTGAACAGGCGTTGCTC
AGCACGCCGCTTGCGGTGCCTACCGATTGGCTGCAAGCACCGCACCATGGCAGTCGCAGCTCCTCATCCTGGGCCTTTTT
GCAACGGCTGACGCCCAAGTCGGTGCTGATTTCGCGTGGACGTGGCAATGCCTTCGGTCATCCCCATCAGCAGGTGCTAG
AGCGCTATCGGGCGTTAGGCAGCCAGGTGTACGACAGCGCGGAGCAGGGCGCCGTGCGCCTCCGACTCGGGGCCTTTGCC
CCGCCGGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGTGAACGGTTACCCTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (494-673)

• Domain of unknown function (DUF4131) (DUF4131) (16-163)

• Competence protein (Competence) (194-457)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	60.556	97.693	0.592
comA	Ralstonia pseudosolanacearum GMI1000	35.302	100	0.381