Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACLMBU_RS12025 Genome accession   NZ_OY782519
Coordinates   2555170..2555805 (+) Length   211 a.a.
NCBI ID   WP_010567804.1    Uniprot ID   A0A5C5Q1P4
Organism   MAG: Pseudomonas extremaustralis isolate 6328a48c-d287-402b-9a22-4be284e47c5f     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2550170..2560805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLMBU_RS12010 (U3A02_RS12020) - 2550832..2552202 (+) 1371 WP_321373601.1 sensor histidine kinase -
  ACLMBU_RS12015 (U3A02_RS12025) - 2552206..2552721 (-) 516 WP_042947820.1 DUF2062 domain-containing protein -
  ACLMBU_RS12020 (U3A02_RS12030) comA 2552869..2555082 (+) 2214 WP_321373608.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLMBU_RS12025 (U3A02_RS12035) exbB 2555170..2555805 (+) 636 WP_010567804.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLMBU_RS12030 (U3A02_RS12040) - 2555802..2556230 (+) 429 WP_010567805.1 ExbD/TolR family protein -
  ACLMBU_RS12035 (U3A02_RS12045) lpxK 2556230..2557240 (+) 1011 WP_321373613.1 tetraacyldisaccharide 4'-kinase -
  ACLMBU_RS12040 (U3A02_RS12050) - 2557264..2557449 (+) 186 WP_003174668.1 Trm112 family protein -
  ACLMBU_RS12045 (U3A02_RS12055) kdsB 2557446..2558210 (+) 765 WP_321144111.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLMBU_RS12050 (U3A02_RS12060) - 2558210..2558674 (+) 465 WP_321144110.1 low molecular weight protein-tyrosine-phosphatase -
  ACLMBU_RS12055 (U3A02_RS12065) murB 2558671..2559690 (+) 1020 WP_321373649.1 UDP-N-acetylmuramate dehydrogenase -
  ACLMBU_RS12060 (U3A02_RS12070) - 2559752..2560423 (-) 672 WP_321373652.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.05 Da        Isoelectric Point: 7.3613

>NTDB_id=1161910 ACLMBU_RS12025 WP_010567804.1 2555170..2555805(+) (exbB) [MAG: Pseudomonas extremaustralis isolate 6328a48c-d287-402b-9a22-4be284e47c5f]
MWELVKSGGWMMLPIIMSSIAALGIIAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKDKLKALRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1161910 ACLMBU_RS12025 WP_010567804.1 2555170..2555805(+) (exbB) [MAG: Pseudomonas extremaustralis isolate 6328a48c-d287-402b-9a22-4be284e47c5f]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCATTGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTGACCCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AACAACTGGACAAGGACAAACTCAAGGCACTGCGCGCCAACTCGCCGCTAGGGGAAATCCTCGCGGCGGGCCTTGCCAAC
TCCAAGCATGGCCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCCGCCCGGGTCATTCATGAACTGGAGCGCTATAT
CAACGCGCTCGGCACCATCGCAGCCATGGCGCCATTGCTCGGCCTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGGTCGGGCATGACCACCAACGCTGCCGTGTTGGCCGGTGGTATTTCCAAGGCCTTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGATGAGCTGGTGGTCGGTAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGTGACCGTGATGTGGATCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C5Q1P4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment