Detailed information NTG1161879

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACLMBM_RS08485
• Genome accession: NZ_OY781972
• Coordinates: 1939693..1940865 (-)
• Length: 390 a.a.
• NCBI ID: WP_321276081.1
• Uniprot ID: -
• Organism: MAG: Thiomicrorhabdus indica isolate 830269dd-2df0-462d-a2dc-71ec7b730e8f
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1934693..1945865

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLMBM_RS08470 (U2908_RS08455)	uvrB	1935419..1937452 (+)	2034	WP_130537916.1	excinuclease ABC subunit UvrB	-
ACLMBM_RS08475 (U2908_RS08460)	-	1937455..1938021 (+)	567	WP_321276079.1	tetratricopeptide repeat protein	-
ACLMBM_RS08480 (U2908_RS08465)	-	1938030..1939223 (+)	1194	WP_321276080.1	murein L,D-transpeptidase family protein	-
ACLMBM_RS08485 (U2908_RS08470)	pilU	1939693..1940865 (-)	1173	WP_321276081.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACLMBM_RS08490 (U2908_RS08475)	pilT	1940922..1941959 (-)	1038	WP_321276082.1	type IV pilus twitching motility protein PilT	Machinery gene
ACLMBM_RS08495 (U2908_RS08480)	-	1942191..1942649 (-)	459	WP_321276083.1	DNA polymerase III subunit chi	-
ACLMBM_RS08500 (U2908_RS08485)	-	1942733..1944211 (-)	1479	WP_321276084.1	leucyl aminopeptidase	-
ACLMBM_RS08505 (U2908_RS08490)	lptF	1944491..1945645 (+)	1155	WP_321276085.1	LPS export ABC transporter permease LptF	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43720.70 Da
• Isoelectric Point: 5.1735

>NTDB_id=1161879 ACLMBM_RS08485 WP_321276081.1 1939693..1940865(-) (pilU) [MAG: Thiomicrorhabdus indica isolate 830269dd-2df0-462d-a2dc-71ec7b730e8f]
MQTIDTEQLSELQQILVYFSQNSGSDLFVTAGLPITMKKDGNLVQLTEHKVSPKQASDLCAELMNAEQLDDFIKHSESNF
AFQIPGHGRYRVNVYVQRGTPGMVIRNVKTEIPDFSELNLPEVLKEQILKKRGLILFVGGTGSGKSTSLAALVDIRNTET
HNHIITIEDPIEFMHRHKSSIVTQREVGVDTESYEAALKNTLRQAPDVILIGEIRAQETMEHAIAFAETGHLCLSTLHAN
NTNQALDRIINFFPPNQKNHILLDLSLNLRMIVSQRLVPKIGGGMIAAVEVMLNTPRISQLIFKGEVTEIKDQIKNSTAQ
GMQTFDQSLFNLYESGQISYEDALKNADAMNDLRLEIKLKSKRPPPSNEFGAFDDTPQFSMQKTEEEEQD

Nucleotide

• Length: 1173 bp

>NTDB_id=1161879 ACLMBM_RS08485 WP_321276081.1 1939693..1940865(-) (pilU) [MAG: Thiomicrorhabdus indica isolate 830269dd-2df0-462d-a2dc-71ec7b730e8f]
ATGCAAACCATTGATACAGAACAACTTTCAGAACTTCAACAAATCCTTGTCTATTTCTCTCAAAATAGCGGCTCAGACTT
GTTTGTTACTGCAGGCTTGCCAATCACAATGAAGAAGGACGGCAATCTGGTTCAATTAACCGAACACAAGGTCTCACCCA
AACAAGCAAGCGATCTGTGTGCTGAGTTAATGAATGCGGAGCAACTTGACGATTTTATTAAACACTCAGAATCTAACTTT
GCTTTCCAAATCCCTGGTCATGGGCGTTACCGTGTCAATGTTTATGTGCAACGTGGCACACCTGGAATGGTCATCCGTAA
CGTTAAAACAGAAATTCCAGATTTTAGCGAACTTAATTTGCCAGAAGTTCTCAAGGAACAAATTCTAAAAAAACGTGGGC
TAATTCTTTTTGTTGGGGGAACTGGTTCGGGTAAATCCACCAGTTTGGCGGCACTCGTTGACATACGTAATACTGAAACC
CACAACCACATTATTACCATTGAAGACCCAATCGAATTTATGCACCGTCATAAAAGCTCAATTGTGACTCAACGAGAAGT
CGGTGTGGATACAGAATCCTATGAAGCAGCTTTGAAAAATACCTTGCGACAAGCGCCAGATGTTATCTTGATTGGTGAGA
TTCGTGCTCAAGAAACCATGGAACACGCCATTGCATTTGCAGAAACTGGGCATTTATGTCTATCGACATTGCACGCAAAC
AATACCAACCAAGCACTCGATCGAATCATTAACTTCTTTCCCCCAAATCAGAAAAACCACATTCTGTTGGATTTATCCTT
GAACTTGCGCATGATTGTCTCACAGCGGCTAGTTCCAAAAATTGGCGGCGGGATGATTGCAGCGGTTGAAGTCATGTTAA
ATACCCCTCGCATCTCTCAGTTGATTTTCAAAGGTGAGGTGACAGAAATCAAAGATCAGATTAAAAACTCAACCGCTCAG
GGCATGCAAACATTTGACCAGTCACTTTTCAATCTGTACGAATCCGGCCAGATTAGCTATGAAGATGCGTTAAAAAATGC
CGATGCGATGAATGATTTGCGTCTAGAAATTAAACTAAAAAGCAAACGCCCACCACCGAGCAATGAATTTGGCGCCTTTG
ATGACACCCCTCAATTCAGTATGCAAAAAACAGAGGAAGAGGAACAAGACTAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (38-280)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.941	90.513	0.515
pilU	Vibrio cholerae strain A1552	52.137	90	0.469
pilU	Acinetobacter baylyi ADP1	50	91.795	0.459