Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACORNT_RS11960 Genome accession   NZ_OY776217
Coordinates   2580504..2581004 (+) Length   166 a.a.
NCBI ID   WP_321390987.1    Uniprot ID   -
Organism   MAG: Emcibacter sp. isolate 94883966-76d7-4443-8d17-73b9fd1f6f6b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2575504..2586004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACORNT_RS11950 (U3A18_RS11925) - 2575571..2577148 (-) 1578 WP_321390982.1 methyl-accepting chemotaxis protein -
  ACORNT_RS11955 (U3A18_RS11930) uvrA 2577488..2580331 (-) 2844 WP_321390984.1 excinuclease ABC subunit UvrA -
  ACORNT_RS11960 (U3A18_RS11935) ssb 2580504..2581004 (+) 501 WP_321390987.1 single-stranded DNA-binding protein Machinery gene
  ACORNT_RS11965 (U3A18_RS11940) - 2581121..2581996 (+) 876 WP_321390990.1 imm11 family protein -
  ACORNT_RS11970 (U3A18_RS11945) - 2582019..2582729 (-) 711 WP_321390992.1 GH25 family lysozyme -
  ACORNT_RS11975 (U3A18_RS11950) - 2582801..2583214 (-) 414 WP_321390994.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17439.10 Da        Isoelectric Point: 5.0197

>NTDB_id=1161774 ACORNT_RS11960 WP_321390987.1 2580504..2581004(+) (ssb) [MAG: Emcibacter sp. isolate 94883966-76d7-4443-8d17-73b9fd1f6f6b]
MAGSVNKVILVGNLGRDPEVRHTQDGSPVVNLSLATSETWKDRATGERKERTEWHRVVIFNENLCRVAEQYLKKGSTIYI
EGSLQTRKWTDQSGVEKYTTEIVLQKYRGELTMLGGRNEGGSGGGFSSGGDDFGGGSSGGGYGGGSGGGGSAPSGGGGDM
DDEIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1161774 ACORNT_RS11960 WP_321390987.1 2580504..2581004(+) (ssb) [MAG: Emcibacter sp. isolate 94883966-76d7-4443-8d17-73b9fd1f6f6b]
ATGGCAGGTAGTGTCAATAAAGTCATTCTGGTGGGGAATCTGGGCCGGGACCCGGAAGTGCGCCATACACAGGACGGGTC
GCCGGTGGTGAATCTGAGCCTTGCCACCTCCGAGACCTGGAAAGACCGGGCGACCGGGGAGCGCAAGGAGCGCACCGAAT
GGCACCGGGTGGTAATCTTTAATGAAAACCTGTGCCGGGTCGCGGAACAATATCTTAAAAAAGGCTCCACCATCTATATC
GAGGGATCCCTGCAGACCCGCAAATGGACCGACCAGAGCGGTGTCGAGAAATACACCACCGAGATCGTGCTGCAGAAATA
CCGCGGCGAACTGACCATGCTCGGCGGTCGTAACGAGGGCGGCTCAGGCGGCGGTTTCTCCAGCGGCGGCGATGACTTTG
GCGGCGGGTCCTCCGGTGGTGGTTATGGTGGTGGCTCCGGTGGTGGTGGATCAGCCCCGTCCGGCGGCGGCGGCGATATG
GACGACGAAATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.555

100

0.506
  ssb Glaesserella parasuis strain SC1401

43.386

100

0.494
  ssb Neisseria gonorrhoeae MS11

41.304

100

0.458
  ssb Neisseria meningitidis MC58

39.665

100

0.428

Multiple sequence alignment