Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACLMBS_RS10390 | Genome accession | NZ_OY769918 |
| Coordinates | 1482277..1482762 (-) | Length | 161 a.a. |
| NCBI ID | WP_319547016.1 | Uniprot ID | - |
| Organism | MAG: Ruegeria conchae isolate e4dd6229-0c68-44f9-97e1-a998fc9d2878 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1477277..1487762
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLMBS_RS10365 (SLU24_RS10335) | - | 1477739..1479265 (-) | 1527 | WP_319547012.1 | hypothetical protein | - |
| ACLMBS_RS10370 (SLU24_RS10340) | - | 1479255..1479404 (-) | 150 | WP_319547013.1 | hypothetical protein | - |
| ACLMBS_RS10375 (SLU24_RS10345) | - | 1479484..1480071 (+) | 588 | WP_010439601.1 | shikimate kinase | - |
| ACLMBS_RS10380 (SLU24_RS10350) | aroB | 1480071..1481180 (+) | 1110 | WP_319547014.1 | 3-dehydroquinate synthase | - |
| ACLMBS_RS10385 (SLU24_RS10355) | - | 1481188..1482258 (-) | 1071 | WP_319547015.1 | site-2 protease family protein | - |
| ACLMBS_RS10390 (SLU24_RS10360) | ssb | 1482277..1482762 (-) | 486 | WP_319547016.1 | single-stranded DNA-binding protein | Machinery gene |
| ACLMBS_RS10395 (SLU24_RS10365) | - | 1482970..1483548 (+) | 579 | WP_010439608.1 | lytic transglycosylase domain-containing protein | - |
| ACLMBS_RS10400 (SLU24_RS10370) | - | 1483645..1484607 (+) | 963 | WP_260025851.1 | LuxR C-terminal-related transcriptional regulator | - |
| ACLMBS_RS10405 (SLU24_RS10375) | - | 1484736..1485722 (+) | 987 | WP_319547017.1 | MBL fold metallo-hydrolase | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17155.89 Da Isoelectric Point: 5.2795
>NTDB_id=1161761 ACLMBS_RS10390 WP_319547016.1 1482277..1482762(-) (ssb) [MAG: Ruegeria conchae isolate e4dd6229-0c68-44f9-97e1-a998fc9d2878]
MAGSVNKVILVGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNTGERRERTEWHSVAIFNEGLVRVAEQYLRKGSKIYI
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLVMLDARGEGGGGGGGYGGGQAGGGYGDPYGGPSSAPAPASGGIDDDEIP
F
MAGSVNKVILVGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNTGERRERTEWHSVAIFNEGLVRVAEQYLRKGSKIYI
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLVMLDARGEGGGGGGGYGGGQAGGGYGDPYGGPSSAPAPASGGIDDDEIP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=1161761 ACLMBS_RS10390 WP_319547016.1 1482277..1482762(-) (ssb) [MAG: Ruegeria conchae isolate e4dd6229-0c68-44f9-97e1-a998fc9d2878]
ATGGCGGGTTCAGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCCGCGATCCTGAAGTGCGGACGTTTCAAAACGGTGG
TAAAGTATGCAACCTGCGTATTGCCACCTCGGAAACCTGGAAGGACCGCAATACCGGAGAGCGCCGTGAACGGACAGAAT
GGCACTCGGTCGCCATATTCAACGAAGGACTTGTACGCGTAGCTGAACAATATCTGCGCAAGGGTTCAAAAATTTACATC
GAGGGGCAATTGCAGACGCGTAAGTGGCAGGATCAGTCCGGTCAGGATCGTTATTCGACCGAGGTGGTGCTGCAGGGCTT
CGGCTCGACGCTGGTAATGCTCGACGCCCGCGGTGAAGGCGGCGGCGGTGGAGGCGGCTATGGCGGCGGACAAGCCGGCG
GCGGATATGGCGACCCATATGGCGGCCCCTCCAGCGCACCAGCCCCTGCGTCGGGCGGAATCGACGATGACGAGATTCCG
TTCTAA
ATGGCGGGTTCAGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCCGCGATCCTGAAGTGCGGACGTTTCAAAACGGTGG
TAAAGTATGCAACCTGCGTATTGCCACCTCGGAAACCTGGAAGGACCGCAATACCGGAGAGCGCCGTGAACGGACAGAAT
GGCACTCGGTCGCCATATTCAACGAAGGACTTGTACGCGTAGCTGAACAATATCTGCGCAAGGGTTCAAAAATTTACATC
GAGGGGCAATTGCAGACGCGTAAGTGGCAGGATCAGTCCGGTCAGGATCGTTATTCGACCGAGGTGGTGCTGCAGGGCTT
CGGCTCGACGCTGGTAATGCTCGACGCCCGCGGTGAAGGCGGCGGCGGTGGAGGCGGCTATGGCGGCGGACAAGCCGGCG
GCGGATATGGCGACCCATATGGCGGCCCCTCCAGCGCACCAGCCCCTGCGTCGGGCGGAATCGACGATGACGAGATTCCG
TTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
51.613 |
100 |
0.596 |
| ssb | Vibrio cholerae strain A1552 |
51.136 |
100 |
0.559 |
| ssb | Neisseria meningitidis MC58 |
41.899 |
100 |
0.466 |
| ssb | Neisseria gonorrhoeae MS11 |
41.899 |
100 |
0.466 |