Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   U8955_RS01865 Genome accession   NZ_OY769914
Coordinates   338730..340697 (+) Length   655 a.a.
NCBI ID   WP_038804137.1    Uniprot ID   A0A7T2ZXU7
Organism   Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 333730..345697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8955_RS01850 (SDENT7746_01880) - 334151..335182 (+) 1032 WP_038804140.1 sensor histidine kinase -
  U8955_RS01855 (SDENT7746_01885) - 335314..336798 (-) 1485 WP_038804139.1 DUF1846 domain-containing protein -
  U8955_RS01860 (SDENT7746_01890) - 336951..338561 (+) 1611 WP_038804138.1 glycoside hydrolase family 13 protein -
  U8955_RS01865 (SDENT7746_01895) amiA 338730..340697 (+) 1968 WP_038804137.1 peptide ABC transporter substrate-binding protein Regulator
  U8955_RS01870 (SDENT7746_01900) amiA3 340847..342808 (+) 1962 WP_068981895.1 peptide ABC transporter substrate-binding protein Regulator
  U8955_RS01875 (SDENT7746_01905) - 342996..344441 (+) 1446 WP_038804136.1 LCP family protein -
  U8955_RS01880 (SDENT7746_01910) cps4B 344443..345174 (+) 732 WP_038804135.1 capsular polysaccharide biosynthesis protein Cps4B -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72483.16 Da        Isoelectric Point: 5.2154

>NTDB_id=1161705 U8955_RS01865 WP_038804137.1 338730..340697(+) (amiA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
MKSKKWLLGAGAVLSAALLLTACGQNEKKADAPKTFSYVYAIDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLSLLQDSIKGLAAYISGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSSILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGADKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTLYSPEKAKVAFAKAKAELQAKGVTFPIRLDVPVEQTDVIAVQQTNSLKQSIESTLGTENVIVDVLQMTDNEKM
SITSQAKVPSQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGLTRGKDPEVMAQVGLDEYKKLLDDAASETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQKDVVTTKEYEEALKKWQKEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1161705 U8955_RS01865 WP_038804137.1 338730..340697(+) (amiA) [Streptococcus oralis subsp. dentisani isolate Streptococcus dentisani 7746]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTCTTGAGCGCAGCCCTTCTGTTAACTGCTTGTGGGCAAAACGA
AAAGAAAGCTGATGCTCCCAAGACATTTTCTTATGTCTATGCAATAGATCCATCATCTTTGGACTACAGCGTGACGAGCA
AGAGCTCAACTTCTGACGTTATAGCCAACGTTGTCGATGGCCTCTTGGAAAACGATAAATACGGGAACTTGATTCCGTCG
CTTGCAGAAGACTGGTCCGTTTCTAAAGATGGCTTGACCTATACCTACAAACTTCGTAAGGGTGTAAAATGGTATACTTC
TGAGGGAGAAGAGTATGCTGAGGTCAAGGCTCAGGACTTTGTTACTGGTCTGAAACACGCGGCTGATGGCAAATCAGACG
GCCTCTCTCTCCTTCAAGATTCTATCAAAGGCTTGGCTGCCTACATCAGTGGAGAGAGCAATGACTTTTCTACTGTAGGA
GTCAAGGCTGTTGACGATTACACGGTTGAATATACGCTTAACAAACCAGAAAGCTTCTGGAACTCTAAAGTCACAACTGC
AACCATGCTTCCAGTTAATGAAGAATTCTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACACCATCAAGTATTCTTT
ATAACGGTCCTTACTTTTTGAAATCATTGACTTCAAAATCAGTCATCGAATATGAAAAGAATCCAAACTACTGGGATAAG
GACAATGTTAAGATTGACAATATTAAACTAACCTTCTACGATGGTTCAGACCAAGAATCTTTGATTCGTAGCTTTACACA
AGGTGCCTATACAACAGCTCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAAAAAGAGTACGGAGATAAGATTG
TTTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAGTCTTACAATAAAACAGCCAAAACA
GACGAAGCTCAAAAAACATCAACCAAAGAAGCTCTTCTTAACAAGAACTTCCGTCAGGCGCTGAACTTTGCCCTTGACCG
TCATTCTTACACTGCTCAGTTGAATGGTGAAGAAGGTGCGGACAAAATTATCCGTAACAGCCTAGTGCCTCATGACTACG
TTCAAGTAGGTGAAAAGACCTTTGGAGAGTTGGCTCAGGCAGAGCTGGTTTCTTACGGGGACCAATGGAAAGATGTAGCC
CTTACTGATGGTAAGGATACGCTTTACAGTCCTGAAAAAGCCAAGGTAGCCTTTGCAAAGGCTAAAGCAGAATTGCAGGC
TAAGGGTGTGACCTTCCCAATCCGTTTGGATGTTCCAGTTGAACAGACCGATGTCATTGCCGTTCAACAGACTAACTCAC
TCAAGCAGTCTATCGAATCAACACTTGGTACGGAGAATGTCATTGTCGATGTCCTTCAAATGACCGATAATGAAAAAATG
AGTATTACATCCCAAGCCAAAGTACCATCTCAAAAAGACTATGACTTGAACGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTAAACATTCTTGATGCTAAGAAAGGTTCTGCTCTTAAACACTTGGGGCTCACTCGTGGAAAAGACC
CAGAAGTGATGGCTCAAGTCGGTCTAGACGAATACAAGAAACTCTTGGATGATGCCGCATCTGAAACAAGCGACCTCAAT
AAGCGTTACGAAAAATACGCTAAAGCCCAAGCCTGGGTATCGGATAGTTCGCTCTTGATCCCAGTTGCCTCTTCAGGTGG
TTCTCCAACTGTTAGCCGTACTGTACCATTCACAAAAGCATACTCTCAAGTCGGAATCAAGGGAGACCCGTTTGTATTCA
AAGGTTTGGAGCTGCAAAAGGATGTCGTGACTACAAAAGAATACGAAGAAGCTCTCAAGAAATGGCAGAAAGAAAAAATT
GAAACAAATGCCAAATACCAAAAAGAGCTAGAAAAACATGTCAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T2ZXU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.471

100

0.557
  amiA3 Streptococcus thermophilus LMD-9

54.476

100

0.548
  amiA3 Streptococcus thermophilus LMG 18311

54.021

100

0.544

Multiple sequence alignment