Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACKPCT_RS06155 Genome accession   NZ_OY762534
Coordinates   1097769..1098308 (-) Length   179 a.a.
NCBI ID   WP_090073711.1    Uniprot ID   A0A1I5I921
Organism   MAG: Cohaesibacter marisflavi isolate 9db6b9be-bc22-45cd-a04b-979e77e3e096     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1092769..1103308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKPCT_RS06145 (SLU04_RS06120) - 1095517..1096530 (-) 1014 WP_319568679.1 efflux RND transporter periplasmic adaptor subunit -
  ACKPCT_RS06150 (SLU04_RS06125) - 1096702..1097649 (+) 948 WP_090073710.1 cation diffusion facilitator family transporter -
  ACKPCT_RS06155 (SLU04_RS06130) ssb 1097769..1098308 (-) 540 WP_090073711.1 single-stranded DNA-binding protein Machinery gene
  ACKPCT_RS06160 (SLU04_RS06135) uvrA 1098695..1101589 (+) 2895 WP_319568680.1 excinuclease ABC subunit UvrA -
  ACKPCT_RS06165 (SLU04_RS06140) - 1102582..1103202 (-) 621 WP_319568681.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18731.38 Da        Isoelectric Point: 5.0011

>NTDB_id=1161613 ACKPCT_RS06155 WP_090073711.1 1097769..1098308(-) (ssb) [MAG: Cohaesibacter marisflavi isolate 9db6b9be-bc22-45cd-a04b-979e77e3e096]
MAGSVNKVILVGNLGADPDIRRTQDGRPICNLSVATSESWKDRNSGERRERTEWHRVVIFNEGLCRIAEQYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEVVLQGFNGNLTMLDNRGEGGGGGGFGGGQSGGGDFGGPGGGGYGGGNPGGFGGGGQGPS
GGGQPSGGFRDEMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1161613 ACKPCT_RS06155 WP_090073711.1 1097769..1098308(-) (ssb) [MAG: Cohaesibacter marisflavi isolate 9db6b9be-bc22-45cd-a04b-979e77e3e096]
ATGGCCGGTAGCGTAAACAAAGTCATTCTGGTTGGCAATCTGGGAGCAGATCCCGATATTCGCAGAACTCAGGATGGCCG
CCCGATCTGCAACCTGTCTGTCGCCACTTCCGAAAGCTGGAAAGATCGCAACTCTGGCGAACGGCGCGAACGGACCGAAT
GGCACCGCGTGGTCATTTTCAATGAGGGCCTGTGTCGGATCGCCGAGCAGTATCTCAGAAAAGGCTCAAAGGTCTATCTG
GAAGGCCAGCTGCAGACGCGCAAGTGGCAGGACCAGAGCGGACAGGATCGATATTCCACAGAAGTCGTCTTACAAGGCTT
TAATGGCAACCTCACCATGCTGGATAACCGCGGCGAAGGCGGTGGCGGTGGCGGATTTGGCGGCGGCCAGTCCGGTGGCG
GCGATTTCGGCGGCCCTGGTGGCGGTGGTTATGGTGGCGGAAACCCGGGCGGCTTCGGCGGCGGCGGGCAGGGCCCTTCA
GGGGGTGGCCAGCCTTCTGGTGGCTTCCGCGACGAAATGGACGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I5I921

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.51

100

0.553
  ssb Vibrio cholerae strain A1552

48.889

100

0.492
  ssb Neisseria meningitidis MC58

40.556

100

0.408
  ssb Neisseria gonorrhoeae MS11

40.556

100

0.408

Multiple sequence alignment