Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABIN53_RS17420 Genome accession   NZ_OY762495
Coordinates   4273941..4274384 (-) Length   147 a.a.
NCBI ID   WP_346857255.1    Uniprot ID   -
Organism   MAG: uncultured Draconibacterium sp. isolate 5c67fe37-86b1-4796-b211-194234538617     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4268941..4279384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABIN53_RS17395 pgl 4269087..4269818 (-) 732 WP_346857250.1 6-phosphogluconolactonase -
  ABIN53_RS17400 zwf 4269850..4271346 (-) 1497 WP_346857251.1 glucose-6-phosphate dehydrogenase -
  ABIN53_RS17405 - 4271358..4271987 (-) 630 WP_346857252.1 4'-phosphopantetheinyl transferase superfamily protein -
  ABIN53_RS17410 - 4271994..4272578 (-) 585 WP_346857253.1 gliding motility lipoprotein GldD -
  ABIN53_RS17415 gldE 4272605..4273924 (-) 1320 WP_346857254.1 gliding motility-associated protein GldE -
  ABIN53_RS17420 ssb 4273941..4274384 (-) 444 WP_346857255.1 single-stranded DNA-binding protein Machinery gene
  ABIN53_RS17425 mutY 4274456..4275505 (-) 1050 WP_346857256.1 A/G-specific adenine glycosylase -
  ABIN53_RS17430 - 4275642..4275926 (+) 285 WP_343334849.1 HU family DNA-binding protein -
  ABIN53_RS17435 - 4275933..4276025 (+) 93 WP_202914927.1 AURKAIP1/COX24 domain-containing protein -
  ABIN53_RS17440 - 4276141..4277691 (+) 1551 WP_346857257.1 Rne/Rng family ribonuclease -
  ABIN53_RS17445 - 4277757..4278845 (+) 1089 WP_346857258.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16261.02 Da        Isoelectric Point: 4.8037

>NTDB_id=1161590 ABIN53_RS17420 WP_346857255.1 4273941..4274384(-) (ssb) [MAG: uncultured Draconibacterium sp. isolate 5c67fe37-86b1-4796-b211-194234538617]
MSVNKVILVGNVGKDPEVRHLDSGVAVANFPLATSESYTAKNGERVTTTEWHNIVLWRGLADVAEKYVTKGRQLYIEGRI
RTRSYDDKDGNKRYITEIYGDTMQMLGTKADNQGGDVQNKQQSSPISTPAASEPQIDEPSGDEDLPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1161590 ABIN53_RS17420 WP_346857255.1 4273941..4274384(-) (ssb) [MAG: uncultured Draconibacterium sp. isolate 5c67fe37-86b1-4796-b211-194234538617]
ATGTCAGTAAACAAAGTTATTTTAGTAGGAAACGTTGGGAAAGATCCTGAAGTAAGACATTTAGACTCGGGCGTTGCAGT
TGCAAATTTTCCTTTGGCAACATCAGAATCATACACTGCAAAAAACGGTGAAAGAGTTACAACTACCGAGTGGCACAACA
TTGTACTTTGGCGTGGCTTGGCCGATGTGGCAGAAAAATATGTTACCAAAGGACGTCAATTGTATATTGAAGGACGAATT
CGTACCCGATCGTACGATGACAAAGACGGAAATAAAAGGTACATTACTGAGATTTATGGCGACACCATGCAAATGTTAGG
TACCAAAGCCGACAATCAGGGAGGAGACGTACAAAACAAACAACAGTCATCACCAATATCAACACCTGCGGCTAGCGAGC
CACAAATTGATGAACCAAGTGGTGATGAAGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

43.605

100

0.51
  ssb Neisseria gonorrhoeae MS11

45.033

100

0.463
  ssb Neisseria meningitidis MC58

44.371

100

0.456
  ssb Glaesserella parasuis strain SC1401

47.328

89.116

0.422

Multiple sequence alignment