Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACKU4N_RS17545 Genome accession   NZ_OY761461
Coordinates   4448747..4449172 (+) Length   141 a.a.
NCBI ID   WP_321318588.1    Uniprot ID   -
Organism   MAG: Labilibaculum sp. isolate 39fbe964-f1d1-47e5-b13f-1b1892be6b75     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4443747..4454172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKU4N_RS17530 (U2973_RS17450) - 4445383..4446939 (-) 1557 WP_321318583.1 Rne/Rng family ribonuclease -
  ACKU4N_RS17535 (U2973_RS17455) - 4447186..4447470 (-) 285 WP_101259605.1 HU family DNA-binding protein -
  ACKU4N_RS17540 (U2973_RS17460) mutY 4447622..4448674 (+) 1053 WP_321318587.1 A/G-specific adenine glycosylase -
  ACKU4N_RS17545 (U2973_RS17465) ssb 4448747..4449172 (+) 426 WP_321318588.1 single-stranded DNA-binding protein Machinery gene
  ACKU4N_RS17550 (U2973_RS17470) gldE 4449204..4450535 (+) 1332 WP_321318590.1 gliding motility-associated protein GldE -
  ACKU4N_RS17555 (U2973_RS17475) gldD 4450593..4451174 (+) 582 WP_321318591.1 gliding motility lipoprotein GldD -
  ACKU4N_RS17560 (U2973_RS17480) - 4451191..4451835 (+) 645 WP_321318593.1 4'-phosphopantetheinyl transferase superfamily protein -
  ACKU4N_RS17565 (U2973_RS17485) - 4451876..4453501 (-) 1626 WP_321318595.1 alkaline phosphatase family protein -
  ACKU4N_RS17570 (U2973_RS17490) - 4453625..4453975 (-) 351 WP_321318601.1 DUF190 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15785.59 Da        Isoelectric Point: 4.6762

>NTDB_id=1161561 ACKU4N_RS17545 WP_321318588.1 4448747..4449172(+) (ssb) [MAG: Labilibaculum sp. isolate 39fbe964-f1d1-47e5-b13f-1b1892be6b75]
MSVNKVILVGNVGKDPEVKYLDNGVAVCNFSLATSETYNNKNGEKVTQTEWHNIVLWRKLAEIAETYVKKGMQIYIEGQI
RTRNWEDKDGVKRYTTEIFGTSMQMLGRKAEGSSEPQGSPEVAQQTSSDSSATEETDDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1161561 ACKU4N_RS17545 WP_321318588.1 4448747..4449172(+) (ssb) [MAG: Labilibaculum sp. isolate 39fbe964-f1d1-47e5-b13f-1b1892be6b75]
ATGTCAGTAAACAAAGTAATTCTTGTTGGAAATGTTGGTAAAGATCCAGAAGTGAAATATCTTGACAATGGTGTAGCCGT
TTGTAACTTTTCACTTGCAACCAGCGAAACATACAACAACAAAAATGGCGAAAAAGTTACCCAGACAGAATGGCACAATA
TTGTACTGTGGCGTAAACTAGCCGAAATTGCAGAGACTTACGTAAAAAAAGGAATGCAAATTTACATTGAAGGTCAAATC
AGAACACGTAACTGGGAAGATAAAGACGGCGTAAAAAGATATACGACTGAAATTTTCGGCACCAGCATGCAAATGTTAGG
CCGCAAAGCAGAAGGTAGTTCTGAACCACAAGGTAGTCCCGAAGTCGCCCAACAAACGTCTTCCGACTCATCTGCAACAG
AAGAAACGGATGATCTTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

42.529

100

0.525
  ssb Neisseria gonorrhoeae MS11

42.529

100

0.525
  ssb Vibrio cholerae strain A1552

50

93.617

0.468
  ssb Glaesserella parasuis strain SC1401

50.45

78.723

0.397

Multiple sequence alignment