Detailed information NTG1161522

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACLMBN_RS13330
• Genome accession: NZ_OY760626
• Coordinates: 2828757..2829632 (+)
• Length: 291 a.a.
• NCBI ID: WP_321407223.1
• Uniprot ID: -
• Organism: MAG: Tolumonas auensis isolate c7031faa-31f6-4012-988d-549758c2b37d
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2823757..2834632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLMBN_RS13315 (U2939_RS13265)	-	2825225..2825680 (+)	456	WP_321407217.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ACLMBN_RS13320 (U2939_RS13270)	pilB	2825803..2827461 (+)	1659	WP_411354443.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACLMBN_RS13325 (U2939_RS13275)	pilC	2827480..2828742 (+)	1263	WP_321407222.1	type II secretion system F family protein	Machinery gene
ACLMBN_RS13330 (U2939_RS13280)	pilD	2828757..2829632 (+)	876	WP_321407223.1	A24 family peptidase	Machinery gene
ACLMBN_RS13335 (U2939_RS13285)	coaE	2829632..2830249 (+)	618	WP_321407225.1	dephospho-CoA kinase	-
ACLMBN_RS13340 (U2939_RS13290)	yacG	2830298..2830516 (+)	219	WP_012728762.1	DNA gyrase inhibitor YacG	-
ACLMBN_RS13345 (U2939_RS13295)	mutT	2830513..2830911 (-)	399	WP_321407229.1	8-oxo-dGTP diphosphatase MutT	-
ACLMBN_RS13350 (U2939_RS13300)	secA	2830980..2833703 (-)	2724	WP_321407231.1	preprotein translocase subunit SecA	-
ACLMBN_RS13355 (U2939_RS13305)	-	2833827..2833958 (+)	132	WP_321407233.1	hypothetical protein	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32806.02 Da
• Isoelectric Point: 6.8255

>NTDB_id=1161522 ACLMBN_RS13330 WP_321407223.1 2828757..2829632(+) (pilD) [MAG: Tolumonas auensis isolate c7031faa-31f6-4012-988d-549758c2b37d]
MDLIFMLYSQYVWLYFFLLGLFSLLVGSFLNVLIYRLPIMLERSWRQEYQDYFAEGNNPPAQTETYNLFLPRSACPHCGH
QITALENIPLLSWLFLKGRCSSCQHPISARYPLVELLCALASVTVAFYYPPGWALAGALLLTWILLALTFIDFDKLLLPD
QLTLPLLWVGLLLNLSQQFVPLADAVIGAIAGYMVLWSIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPLILILSS
CVGAILGITLVVMRRHQQSKPMPFGPYLAIAGWIALLWGEQLTSWYLGLLS

Nucleotide

• Length: 876 bp

>NTDB_id=1161522 ACLMBN_RS13330 WP_321407223.1 2828757..2829632(+) (pilD) [MAG: Tolumonas auensis isolate c7031faa-31f6-4012-988d-549758c2b37d]
ATGGATCTGATTTTTATGCTTTATAGCCAGTACGTCTGGCTATATTTTTTCCTGCTGGGTCTGTTCTCATTGCTGGTTGG
CAGCTTTCTGAATGTCCTGATCTATCGTCTGCCCATCATGCTGGAACGCAGCTGGCGACAGGAATATCAGGATTATTTTG
CGGAAGGCAATAATCCGCCAGCACAGACTGAAACTTATAACCTGTTTCTGCCGCGTTCCGCCTGCCCGCATTGCGGCCAT
CAGATCACGGCACTGGAAAATATCCCGTTACTCAGCTGGTTATTTCTCAAAGGCCGCTGCAGTTCATGCCAGCACCCCAT
CAGCGCCCGCTATCCGCTGGTCGAGCTGTTGTGTGCACTGGCTTCCGTCACAGTCGCTTTCTATTATCCGCCCGGCTGGG
CACTGGCTGGCGCACTGCTGCTGACCTGGATTTTGCTGGCACTGACTTTTATCGACTTCGATAAATTATTACTGCCGGAT
CAGTTAACCCTCCCCCTGCTCTGGGTAGGTTTATTACTCAATCTGTCACAACAGTTTGTACCGCTCGCTGATGCCGTGAT
CGGTGCCATCGCCGGTTATATGGTGTTGTGGTCCATTTACTGGGCGTTCAAACTGCTTACCGGTAAAGAAGGTATGGGCT
ATGGCGATTTCAAATTACTCGCCGCGCTCGGTGCCTGGCTCGGCTGGCAATCGCTGCCGCTTATCCTGATCCTCTCCTCT
TGTGTCGGTGCAATACTGGGTATCACACTGGTGGTTATGCGACGTCATCAGCAGAGTAAACCAATGCCATTCGGCCCCTA
TCTGGCCATTGCCGGCTGGATCGCCTTACTCTGGGGTGAGCAGTTAACCAGCTGGTATCTGGGCTTGCTCAGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.929	96.907	0.581
pilD	Vibrio campbellii strain DS40M4	54.255	96.907	0.526
pilD	Acinetobacter nosocomialis M2	49.653	98.969	0.491
pilD	Acinetobacter baumannii D1279779	49.306	98.969	0.488
pilD	Neisseria gonorrhoeae MS11	48.649	89.003	0.433