Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACORJQ_RS03660 Genome accession   NZ_OY759719
Coordinates   860687..861286 (+) Length   199 a.a.
NCBI ID   WP_321326106.1    Uniprot ID   -
Organism   MAG: Thiomicrorhabdus sp. isolate cfc1d0dd-18bb-48af-b12b-b905256c9fab     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 855687..866286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACORJQ_RS03650 (U2926_RS03645) - 858312..859025 (-) 714 WP_321326102.1 SIMPL domain-containing protein -
  ACORJQ_RS03655 (U2926_RS03650) - 859255..860634 (+) 1380 WP_321326104.1 MFS transporter -
  ACORJQ_RS03660 (U2926_RS03655) ssb 860687..861286 (+) 600 WP_321326106.1 single-stranded DNA-binding protein Machinery gene
  ACORJQ_RS03665 (U2926_RS03660) - 861477..861622 (+) 146 Protein_714 IS1595 family transposase -
  ACORJQ_RS03670 (U2926_RS03665) - 861933..863483 (-) 1551 Protein_715 methyl-accepting chemotaxis protein -
  ACORJQ_RS03675 (U2926_RS03670) - 863711..865723 (-) 2013 WP_321326109.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21525.67 Da        Isoelectric Point: 5.7556

>NTDB_id=1161448 ACORJQ_RS03660 WP_321326106.1 860687..861286(+) (ssb) [MAG: Thiomicrorhabdus sp. isolate cfc1d0dd-18bb-48af-b12b-b905256c9fab]
MRGVNKVILVGTLGADPEVKYAANGNAIANLSVATSEEWNDKNTGQKQQKTEWHRVSMFGKLAEIAGQYLKKGSQVYLEG
KLQTRKWQDQNGQDRYTTEVVLSGFDGTMQMLGGGNRQGGDASFGGGNDFNQAPMGNQGGQMGGQPQGGFNQQPAQQPRQ
QNPMGQQNVPPMGGHQQPAQPQRAPAYAPNDFDDDDVPF

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1161448 ACORJQ_RS03660 WP_321326106.1 860687..861286(+) (ssb) [MAG: Thiomicrorhabdus sp. isolate cfc1d0dd-18bb-48af-b12b-b905256c9fab]
ATGCGTGGTGTGAATAAAGTCATTTTGGTTGGAACCTTAGGTGCAGACCCAGAAGTTAAATATGCGGCAAATGGTAATGC
CATTGCAAACCTAAGTGTGGCAACCAGTGAAGAGTGGAATGACAAAAACACTGGGCAAAAGCAGCAAAAAACAGAGTGGC
ATCGTGTCTCTATGTTTGGAAAACTCGCTGAGATTGCTGGCCAATACCTTAAAAAAGGCTCACAAGTTTATTTAGAAGGT
AAATTACAAACTCGTAAATGGCAAGACCAAAACGGCCAAGATCGCTACACTACAGAAGTGGTCTTGAGTGGTTTTGACGG
CACCATGCAAATGCTTGGTGGTGGTAATCGTCAGGGGGGTGATGCTTCCTTTGGTGGTGGTAATGACTTTAACCAAGCAC
CTATGGGTAACCAGGGTGGTCAAATGGGCGGACAACCACAAGGTGGTTTTAATCAGCAGCCAGCTCAACAACCGAGACAG
CAAAATCCAATGGGTCAGCAAAATGTTCCGCCAATGGGAGGGCATCAACAACCAGCTCAACCTCAGCGTGCACCAGCCTA
TGCACCAAATGACTTTGATGATGATGACGTACCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

55.556

99.497

0.553
  ssb Glaesserella parasuis strain SC1401

50.732

100

0.523
  ssb Neisseria gonorrhoeae MS11

46.734

100

0.467
  ssb Neisseria meningitidis MC58

46.734

100

0.467

Multiple sequence alignment