Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DESME_RS15150 Genome accession   NZ_CP007032
Coordinates   3153602..3154015 (-) Length   137 a.a.
NCBI ID   WP_006717753.1    Uniprot ID   -
Organism   Desulfitobacterium metallireducens DSM 15288     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3148602..3159015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DESME_RS15125 (DESME_15755) lonC 3149419..3151317 (-) 1899 WP_006716730.1 Lon family ATP-dependent protease -
  DESME_RS15130 (DESME_15760) rplI 3151354..3151800 (-) 447 WP_006716729.1 50S ribosomal protein L9 -
  DESME_RS15135 (DESME_15765) - 3151812..3152753 (-) 942 WP_167998852.1 DUF2232 domain-containing protein -
  DESME_RS15140 (DESME_15770) - 3152774..3153076 (-) 303 WP_006716727.1 MazG-like family protein -
  DESME_RS15145 (DESME_15775) rpsR 3153351..3153581 (-) 231 WP_006717755.1 30S ribosomal protein S18 -
  DESME_RS15150 (DESME_15780) ssbA 3153602..3154015 (-) 414 WP_006717753.1 single-stranded DNA-binding protein Machinery gene
  DESME_RS15155 (DESME_15785) rpsF 3154033..3154320 (-) 288 WP_006717752.1 30S ribosomal protein S6 -
  DESME_RS15160 (DESME_15790) ychF 3154468..3155568 (-) 1101 WP_006717750.1 redox-regulated ATPase YchF -
  DESME_RS15165 (DESME_15795) - 3155629..3155832 (-) 204 WP_006717749.1 DUF951 domain-containing protein -
  DESME_RS15170 (DESME_15800) - 3155930..3156646 (-) 717 WP_006717747.1 CvpA family protein -
  DESME_RS15175 (DESME_15805) - 3156905..3157531 (-) 627 WP_006717745.1 CBS and ACT domain-containing protein -
  DESME_RS15180 (DESME_15810) - 3157629..3158333 (-) 705 WP_006717743.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15067.80 Da        Isoelectric Point: 5.1953

>NTDB_id=116132 DESME_RS15150 WP_006717753.1 3153602..3154015(-) (ssbA) [Desulfitobacterium metallireducens DSM 15288]
MLNRVVLIGRLTKDPELRYTPSGVAVATFTLAVDRNFKNSNGERDTDFIPCVVYRQLAELCANFLSKGRLASVDGRLQVR
SFEGQDGQRRWVTEVIAENVQFLSPKENGNSGNGTSGNASNVGTYGHEVSLDDDIPF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=116132 DESME_RS15150 WP_006717753.1 3153602..3154015(-) (ssbA) [Desulfitobacterium metallireducens DSM 15288]
ATGTTGAATCGTGTCGTTTTAATTGGCCGTTTAACGAAAGACCCCGAGTTACGTTATACCCCGAGTGGAGTTGCAGTAGC
GACCTTCACTCTAGCCGTGGATCGCAATTTTAAGAATTCCAACGGTGAAAGGGATACGGATTTTATTCCCTGTGTCGTTT
ATCGACAACTGGCTGAGTTATGCGCTAACTTTTTATCAAAAGGTAGATTGGCCTCCGTTGACGGACGACTTCAAGTTCGT
TCTTTTGAGGGTCAAGACGGGCAACGTCGCTGGGTTACAGAAGTAATTGCAGAGAATGTTCAGTTCTTGAGTCCTAAGGA
AAACGGTAACTCAGGGAACGGTACATCCGGTAATGCCAGTAATGTGGGAACCTATGGCCATGAAGTAAGTTTAGATGATG
ATATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.698

77.372

0.555
  ssb Latilactobacillus sakei subsp. sakei 23K

42.353

100

0.526
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.887

77.372

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.17

77.372

0.365

Multiple sequence alignment