Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8805_RS02195 Genome accession   NZ_OY754349
Coordinates   454525..455649 (+) Length   374 a.a.
NCBI ID   WP_317719239.1    Uniprot ID   -
Organism   Escherichia coli isolate F163     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 449525..460649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8805_RS02170 (FGAF163_04240) mscL 449651..450061 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  R8805_RS02175 (FGAF163_04250) trkA 450191..451567 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  R8805_RS02180 (FGAF163_04260) rsmB 451589..452878 (-) 1290 WP_000744779.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  R8805_RS02185 (FGAF163_04270) fmt 452924..453871 (-) 948 WP_000004432.1 methionyl-tRNA formyltransferase -
  R8805_RS02190 (FGAF163_04280) def 453886..454395 (-) 510 WP_000114984.1 peptide deformylase -
  R8805_RS02195 (FGAF163_04290) dprA 454525..455649 (+) 1125 WP_317719239.1 DNA-protecting protein DprA Machinery gene
  R8805_RS02200 (FGAF163_04300) smg 455621..456094 (+) 474 WP_000460670.1 DUF494 family protein Smg -
  R8805_RS02205 (FGAF163_04310) yrdD 456123..456665 (+) 543 WP_001129723.1 type I DNA topoisomerase -
  R8805_RS02210 (FGAF163_04320) tsaC 456670..457242 (+) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  R8805_RS02215 (FGAF163_04330) aroE 457247..458065 (+) 819 WP_000451211.1 shikimate dehydrogenase -
  R8805_RS02220 (FGAF163_04340) yrdB 458062..458319 (+) 258 WP_001070563.1 DUF1488 domain-containing protein -
  R8805_RS02225 (FGAF163_04350) yrdA 458295..458849 (-) 555 WP_001286216.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40938.87 Da        Isoelectric Point: 6.3122

>NTDB_id=1160871 R8805_RS02195 WP_317719239.1 454525..455649(+) (dprA) [Escherichia coli isolate F163]
MVDTEIWLRLMSISSLYGDDMVRIAHWLAKQSQIDAVGLQQTGLTLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSE
FYPPQLLVTTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLAASLLEHGGALVSEFPPDVPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=1160871 R8805_RS02195 WP_317719239.1 454525..455649(+) (dprA) [Escherichia coli isolate F163]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGTATCAGCAGCTTGTACGGCGATGATATGGTCCGTATAGCTCACTG
GCTGGCAAAACAGTCGCAAATTGATGCGGTTGGATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCGCGAAAGAGTATCGAAAGCTCACTTTGTTGGTTGGAGCAACCCAACCATCATTTAATCCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGTGACGACAGATTACCCAGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGGTTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCTGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTGGGGAATGGACTTAATACCATTCATCCCCGCCGCCATGCCCGACTGGCTGCCAGTTTGCT
TGAACATGGCGGAGCTCTCGTCTCGGAATTTCCCCCCGATGTTCCACCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAAAGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTAGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGTGAAGTTTTTGCCTTGCCAGGTCCAATAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGCAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.78

98.663

0.481
  dprA Vibrio cholerae strain A1552

45.135

98.93

0.447
  dprA Haemophilus influenzae Rd KW20

45.697

90.107

0.412
  dprA Glaesserella parasuis strain SC1401

45.133

90.642

0.409
  dprA Legionella pneumophila strain ERS1305867

44.242

88.235

0.39

Multiple sequence alignment