Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R2K02_RS05425 Genome accession   NZ_OY741352
Coordinates   1087472..1087978 (-) Length   168 a.a.
NCBI ID   WP_002967690.1    Uniprot ID   A0A7L9MC56
Organism   Brucella abortus strain F1/18-0221 isolate FF10_0221     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1082472..1092978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2K02_RS05400 (ZBPBA_01091) - 1084526..1085155 (+) 630 WP_002967687.1 MarC family protein -
  R2K02_RS05405 (ZBPBA_01092) phnN 1085246..1085824 (-) 579 WP_006103407.1 phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN -
  R2K02_RS05410 (ZBPBA_01093) phnF 1086011..1086772 (+) 762 WP_002966839.1 phosphonate metabolism transcriptional regulator PhnF -
  R2K02_RS05415 (ZBPBA_01094) - 1086915..1087316 (+) 402 WP_006103409.1 hypothetical protein -
  R2K02_RS05420 (ZBPBA_01095) - 1087368..1087568 (+) 201 WP_002971429.1 hypothetical protein -
  R2K02_RS05425 (ZBPBA_01096) ssb 1087472..1087978 (-) 507 WP_002967690.1 single-stranded DNA-binding protein Machinery gene
  R2K02_RS05430 (ZBPBA_01097) - 1088546..1088746 (+) 201 WP_002964232.1 hypothetical protein -
  R2K02_RS05435 (ZBPBA_01098) uvrA 1088877..1091801 (+) 2925 WP_002964233.1 excinuclease ABC subunit UvrA -
  R2K02_RS05440 (ZBPBA_01099) - 1091988..1092263 (-) 276 WP_002964234.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18371.15 Da        Isoelectric Point: 5.3476

>NTDB_id=1160851 R2K02_RS05425 WP_002967690.1 1087472..1087978(-) (ssb) [Brucella abortus strain F1/18-0221 isolate FF10_0221]
MAGSVNKVILVGNLGADPEIRRLNSGDMVANLRIATSESWRDRQTGERKDRTEWHSVVIFNENLAKVAEQYLKKGAKVYI
EGALQTRKWQDQNGNDRYSTEIVLQKFRGELQMLDSRSEGGEGRSFGGGGNRNQMSDYSGGGGDFGSSGPSSGSSGGFSR
DLDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1160851 R2K02_RS05425 WP_002967690.1 1087472..1087978(-) (ssb) [Brucella abortus strain F1/18-0221 isolate FF10_0221]
ATGGCTGGTAGCGTCAACAAGGTCATTCTGGTCGGCAATCTTGGTGCAGATCCTGAAATTCGCCGCCTGAATTCCGGCGA
TATGGTTGCCAACCTGCGCATTGCAACCTCGGAAAGCTGGCGTGACCGCCAGACCGGCGAACGCAAGGATCGCACCGAAT
GGCACAGCGTCGTCATCTTCAATGAAAATCTCGCCAAGGTTGCCGAACAATATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTCCAGACCCGCAAGTGGCAGGATCAAAACGGCAATGACCGTTATTCAACGGAAATCGTGCTGCAAAAATT
CCGTGGAGAGCTTCAAATGCTCGACAGCCGCAGCGAAGGCGGCGAGGGCCGTTCCTTCGGCGGTGGTGGCAACCGCAACC
AGATGTCGGATTATTCCGGCGGCGGTGGAGATTTCGGCTCATCCGGCCCATCTTCGGGCAGCAGCGGCGGTTTCTCGCGC
GATCTGGACGATGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.947

100

0.554
  ssb Vibrio cholerae strain A1552

49.711

100

0.512
  ssb Neisseria meningitidis MC58

38.547

100

0.411
  ssb Neisseria gonorrhoeae MS11

37.778

100

0.405

Multiple sequence alignment