Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACI6O7_RS04815 | Genome accession | NZ_OY725152 |
| Coordinates | 972956..973528 (+) | Length | 190 a.a. |
| NCBI ID | WP_404379411.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain IMDO WA12L8 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 966147..1018259 | 972956..973528 | within | 0 |
Gene organization within MGE regions
Location: 966147..1018259
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACI6O7_RS04745 (LLWA12L8_FAMOGCFE_00961) | - | 966147..967280 (-) | 1134 | WP_404379392.1 | tyrosine-type recombinase/integrase | - |
| ACI6O7_RS04750 (LLWA12L8_FAMOGCFE_00962) | - | 967401..968195 (-) | 795 | WP_404379394.1 | hypothetical protein | - |
| ACI6O7_RS04755 (LLWA12L8_FAMOGCFE_00963) | - | 968251..968685 (-) | 435 | WP_404379396.1 | hypothetical protein | - |
| ACI6O7_RS04760 (LLWA12L8_FAMOGCFE_00964) | - | 968695..969039 (-) | 345 | WP_306659746.1 | helix-turn-helix domain-containing protein | - |
| ACI6O7_RS04765 (LLWA12L8_FAMOGCFE_00965) | - | 969319..969549 (+) | 231 | WP_404379398.1 | hypothetical protein | - |
| ACI6O7_RS04770 (LLWA12L8_FAMOGCFE_00966) | - | 969564..969782 (+) | 219 | WP_404379400.1 | hypothetical protein | - |
| ACI6O7_RS04775 (LLWA12L8_FAMOGCFE_00967) | - | 969792..970502 (+) | 711 | WP_404379402.1 | ORF6C domain-containing protein | - |
| ACI6O7_RS04780 (LLWA12L8_FAMOGCFE_00968) | - | 970515..970751 (+) | 237 | WP_011834775.1 | helix-turn-helix domain-containing protein | - |
| ACI6O7_RS04785 (LLWA12L8_FAMOGCFE_00969) | - | 970764..970931 (+) | 168 | WP_404379405.1 | hypothetical protein | - |
| ACI6O7_RS04790 (LLWA12L8_FAMOGCFE_00970) | - | 971082..971363 (-) | 282 | WP_017865015.1 | hypothetical protein | - |
| ACI6O7_RS04795 (LLWA12L8_FAMOGCFE_00971) | - | 971513..971713 (+) | 201 | WP_017865014.1 | helix-turn-helix transcriptional regulator | - |
| ACI6O7_RS04800 (LLWA12L8_FAMOGCFE_00972) | - | 971713..971928 (+) | 216 | WP_017865013.1 | DUF1408 domain-containing protein | - |
| ACI6O7_RS04805 (LLWA12L8_FAMOGCFE_00973) | - | 972046..972441 (+) | 396 | WP_404379407.1 | hypothetical protein | - |
| ACI6O7_RS04810 (LLWA12L8_FAMOGCFE_00974) | - | 972450..972941 (+) | 492 | WP_404379409.1 | ERF family protein | - |
| ACI6O7_RS04815 (LLWA12L8_FAMOGCFE_00975) | ssb | 972956..973528 (+) | 573 | WP_404379411.1 | single-stranded DNA-binding protein | Machinery gene |
| ACI6O7_RS04820 (LLWA12L8_FAMOGCFE_00976) | - | 973653..974459 (+) | 807 | WP_404379413.1 | phage replisome organizer N-terminal domain-containing protein | - |
| ACI6O7_RS04825 (LLWA12L8_FAMOGCFE_00977) | - | 974469..975359 (+) | 891 | WP_058218492.1 | ATP-binding protein | - |
| ACI6O7_RS04830 (LLWA12L8_FAMOGCFE_00978) | - | 975368..975541 (+) | 174 | WP_404379415.1 | hypothetical protein | - |
| ACI6O7_RS04835 (LLWA12L8_FAMOGCFE_00979) | - | 975522..975896 (+) | 375 | WP_404379417.1 | DUF1064 domain-containing protein | - |
| ACI6O7_RS04840 (LLWA12L8_FAMOGCFE_00980) | - | 975893..976105 (+) | 213 | WP_404379419.1 | DUF1031 family protein | - |
| ACI6O7_RS04845 (LLWA12L8_FAMOGCFE_00981) | - | 976239..976403 (+) | 165 | WP_404379421.1 | hypothetical protein | - |
| ACI6O7_RS04850 (LLWA12L8_FAMOGCFE_00982) | - | 976378..976743 (+) | 366 | WP_341540735.1 | DUF658 family protein | - |
| ACI6O7_RS04855 (LLWA12L8_FAMOGCFE_00983) | - | 976754..976927 (+) | 174 | WP_404379423.1 | hypothetical protein | - |
| ACI6O7_RS04860 | - | 976970..977263 (+) | 294 | WP_404379425.1 | hypothetical protein | - |
| ACI6O7_RS04865 (LLWA12L8_FAMOGCFE_00984) | - | 977272..977907 (+) | 636 | WP_404379427.1 | hypothetical protein | - |
| ACI6O7_RS04870 (LLWA12L8_FAMOGCFE_00985) | - | 977918..978433 (+) | 516 | WP_404379429.1 | DUF1642 domain-containing protein | - |
| ACI6O7_RS04875 (LLWA12L8_FAMOGCFE_00986) | - | 978430..978723 (+) | 294 | WP_404379431.1 | hypothetical protein | - |
| ACI6O7_RS04880 (LLWA12L8_FAMOGCFE_00987) | dut | 978720..979142 (+) | 423 | WP_404379435.1 | dUTP diphosphatase | - |
| ACI6O7_RS04885 (LLWA12L8_FAMOGCFE_00988) | - | 979145..979417 (+) | 273 | WP_404379437.1 | hypothetical protein | - |
| ACI6O7_RS04890 (LLWA12L8_FAMOGCFE_00989) | - | 979410..979667 (+) | 258 | WP_404379439.1 | 6-O-methylguanine DNA methyltransferase | - |
| ACI6O7_RS04895 (LLWA12L8_FAMOGCFE_00990) | - | 979667..979849 (+) | 183 | WP_404379441.1 | hypothetical protein | - |
| ACI6O7_RS04900 (LLWA12L8_FAMOGCFE_00991) | - | 979842..980204 (+) | 363 | WP_404379443.1 | hypothetical protein | - |
| ACI6O7_RS04905 (LLWA12L8_FAMOGCFE_00992) | - | 980201..980701 (+) | 501 | WP_404379445.1 | SAM-dependent methyltransferase | - |
| ACI6O7_RS04910 (LLWA12L8_FAMOGCFE_00993) | - | 980757..980999 (+) | 243 | WP_404379447.1 | hypothetical protein | - |
| ACI6O7_RS04915 (LLWA12L8_FAMOGCFE_00994) | - | 980996..981178 (+) | 183 | WP_404379449.1 | DUF1660 domain-containing protein | - |
| ACI6O7_RS04920 (LLWA12L8_FAMOGCFE_00995) | - | 981159..981371 (+) | 213 | WP_404379451.1 | hypothetical protein | - |
| ACI6O7_RS04925 (LLWA12L8_FAMOGCFE_00996) | - | 981711..982016 (+) | 306 | WP_404379453.1 | hypothetical protein | - |
| ACI6O7_RS04930 (LLWA12L8_FAMOGCFE_00997) | - | 982300..982572 (+) | 273 | WP_404379455.1 | hypothetical protein | - |
| ACI6O7_RS04935 (LLWA12L8_FAMOGCFE_00998) | - | 982574..982753 (+) | 180 | WP_404379457.1 | hypothetical protein | - |
| ACI6O7_RS04940 (LLWA12L8_FAMOGCFE_00999) | - | 982755..983069 (+) | 315 | WP_404379459.1 | hypothetical protein | - |
| ACI6O7_RS04945 (LLWA12L8_FAMOGCFE_01000) | - | 983149..983550 (+) | 402 | WP_010905708.1 | RinA family protein | - |
| ACI6O7_RS04950 (LLWA12L8_FAMOGCFE_01001) | - | 983928..984446 (+) | 519 | WP_404379709.1 | HNH endonuclease | - |
| ACI6O7_RS04955 (LLWA12L8_FAMOGCFE_01002) | - | 984573..985028 (+) | 456 | WP_270225268.1 | phage terminase small subunit P27 family | - |
| ACI6O7_RS04960 (LLWA12L8_FAMOGCFE_01003) | - | 985018..986928 (+) | 1911 | WP_404379462.1 | terminase large subunit | - |
| ACI6O7_RS04965 (LLWA12L8_FAMOGCFE_01004) | - | 986897..987106 (+) | 210 | WP_340817064.1 | DUF1056 family protein | - |
| ACI6O7_RS04970 (LLWA12L8_FAMOGCFE_01005) | - | 987103..988281 (+) | 1179 | WP_404379464.1 | phage portal protein | - |
| ACI6O7_RS04975 (LLWA12L8_FAMOGCFE_01006) | - | 988324..989031 (+) | 708 | WP_404379466.1 | head maturation protease, ClpP-related | - |
| ACI6O7_RS04980 (LLWA12L8_FAMOGCFE_01007) | - | 989043..990284 (+) | 1242 | WP_404379468.1 | phage major capsid protein | - |
| ACI6O7_RS04985 (LLWA12L8_FAMOGCFE_01008) | - | 990300..990623 (+) | 324 | WP_404379470.1 | head-tail connector protein | - |
| ACI6O7_RS04990 (LLWA12L8_FAMOGCFE_01009) | - | 990598..990948 (+) | 351 | WP_012898015.1 | phage head closure protein | - |
| ACI6O7_RS04995 (LLWA12L8_FAMOGCFE_01010) | - | 990950..991456 (+) | 507 | WP_404379472.1 | HK97 gp10 family phage protein | - |
| ACI6O7_RS05000 (LLWA12L8_FAMOGCFE_01011) | - | 991453..991848 (+) | 396 | WP_404379474.1 | DUF806 family protein | - |
| ACI6O7_RS05005 (LLWA12L8_FAMOGCFE_01012) | - | 991879..992502 (+) | 624 | WP_404379476.1 | phage tail protein | - |
| ACI6O7_RS05010 (LLWA12L8_FAMOGCFE_01013) | - | 992615..993030 (+) | 416 | Protein_960 | phage tail assembly chaperone | - |
| ACI6O7_RS05015 (LLWA12L8_FAMOGCFE_01014) | - | 993255..998384 (+) | 5130 | WP_404379478.1 | phage tail tape measure protein | - |
| ACI6O7_RS05020 (LLWA12L8_FAMOGCFE_01015) | - | 998387..999931 (+) | 1545 | WP_404379480.1 | distal tail protein Dit | - |
| ACI6O7_RS05025 (LLWA12L8_FAMOGCFE_01016) | - | 999931..1002522 (+) | 2592 | WP_404379482.1 | hypothetical protein | - |
| ACI6O7_RS05030 (LLWA12L8_FAMOGCFE_01017) | - | 1002534..1002761 (+) | 228 | WP_404379484.1 | hypothetical protein | - |
| ACI6O7_RS05035 (LLWA12L8_FAMOGCFE_01018) | - | 1002773..1003093 (+) | 321 | WP_225513203.1 | hypothetical protein | - |
| ACI6O7_RS05040 (LLWA12L8_FAMOGCFE_01019) | - | 1003095..1003556 (+) | 462 | WP_404379486.1 | phage holin | - |
| ACI6O7_RS05045 (LLWA12L8_FAMOGCFE_01020) | - | 1003566..1004480 (+) | 915 | WP_404379488.1 | GH25 family lysozyme | - |
| ACI6O7_RS05050 (LLWA12L8_FAMOGCFE_01021) | - | 1004484..1004609 (+) | 126 | WP_404379490.1 | hypothetical protein | - |
| ACI6O7_RS05055 (LLWA12L8_FAMOGCFE_01022) | - | 1004692..1006305 (+) | 1614 | WP_404379492.1 | SIR2 family protein | - |
| ACI6O7_RS05065 (LLWA12L8_FAMOGCFE_01025) | - | 1007532..1007978 (+) | 447 | WP_404379494.1 | ASCH domain-containing protein | - |
| ACI6O7_RS05070 (LLWA12L8_FAMOGCFE_01026) | - | 1008062..1008388 (+) | 327 | WP_010905638.1 | heavy metal-binding domain-containing protein | - |
| ACI6O7_RS05075 (LLWA12L8_FAMOGCFE_01027) | - | 1008544..1010210 (+) | 1667 | Protein_972 | formate--tetrahydrofolate ligase | - |
| ACI6O7_RS05080 (LLWA12L8_FAMOGCFE_01029) | - | 1010337..1010912 (+) | 576 | WP_404379496.1 | C40 family peptidase | - |
| ACI6O7_RS05085 (LLWA12L8_FAMOGCFE_01030) | - | 1011050..1011895 (+) | 846 | WP_023164024.1 | amino acid ABC transporter substrate-binding protein | - |
| ACI6O7_RS05090 (LLWA12L8_FAMOGCFE_01031) | - | 1012163..1013050 (+) | 888 | WP_004255026.1 | amino acid ABC transporter permease | - |
| ACI6O7_RS05095 (LLWA12L8_FAMOGCFE_01032) | - | 1013062..1013814 (+) | 753 | WP_004255031.1 | amino acid ABC transporter ATP-binding protein | - |
| ACI6O7_RS05100 (LLWA12L8_FAMOGCFE_01033) | - | 1013816..1014043 (+) | 228 | WP_004255037.1 | DUF4059 family protein | - |
| ACI6O7_RS05105 (LLWA12L8_FAMOGCFE_01034) | trxB | 1014238..1015164 (+) | 927 | WP_404379500.1 | thioredoxin-disulfide reductase | - |
| ACI6O7_RS05110 (LLWA12L8_FAMOGCFE_01035) | secG | 1015307..1015555 (+) | 249 | WP_003130913.1 | preprotein translocase subunit SecG | - |
| ACI6O7_RS05115 (LLWA12L8_FAMOGCFE_01036) | rnr | 1015806..1018259 (+) | 2454 | WP_038603357.1 | ribonuclease R | - |
Sequence
Protein
Download Length: 190 a.a. Molecular weight: 21758.58 Da Isoelectric Point: 6.4656
>NTDB_id=1160529 ACI6O7_RS04815 WP_404379411.1 972956..973528(+) (ssb) [Lactococcus lactis strain IMDO WA12L8]
MINNIVLVGRLTKDVELRYTPQNQATATFSLAVSRSFKNASGERETDFINCVIWRQQAENMANFTHKGSLIGITGRIQTR
NYENQQGQRIYVTEVVADSFQLLESRSQGQQQQQQGQYQGQQGNYNQNQNNYQNQGQQNTVPQQHNQGNYQRQPQGNYQN
QQQSAQQRAQQPDPNFGGAPMEINDEDLPF
MINNIVLVGRLTKDVELRYTPQNQATATFSLAVSRSFKNASGERETDFINCVIWRQQAENMANFTHKGSLIGITGRIQTR
NYENQQGQRIYVTEVVADSFQLLESRSQGQQQQQQGQYQGQQGNYNQNQNNYQNQGQQNTVPQQHNQGNYQRQPQGNYQN
QQQSAQQRAQQPDPNFGGAPMEINDEDLPF
Nucleotide
Download Length: 573 bp
>NTDB_id=1160529 ACI6O7_RS04815 WP_404379411.1 972956..973528(+) (ssb) [Lactococcus lactis strain IMDO WA12L8]
ATGATAAATAACATAGTTTTAGTCGGAAGACTAACTAAAGATGTAGAACTTAGATATACTCCACAAAATCAAGCAACAGC
AACTTTCTCGCTTGCAGTGAGTCGCTCTTTCAAAAATGCCAGTGGAGAACGTGAAACAGATTTTATTAACTGTGTTATCT
GGCGACAACAAGCTGAAAATATGGCAAATTTCACACATAAAGGAAGCTTGATTGGTATCACTGGTAGAATCCAAACTCGA
AACTATGAAAATCAACAAGGACAACGTATTTACGTTACTGAAGTTGTTGCAGATAGTTTCCAACTTCTTGAAAGTAGAAG
CCAAGGTCAACAACAGCAACAACAAGGGCAGTATCAGGGACAACAAGGGAATTACAATCAAAACCAAAATAATTACCAAA
ATCAAGGTCAACAAAATACCGTTCCACAGCAACATAACCAAGGTAACTACCAAAGACAACCTCAAGGTAATTATCAAAAT
CAGCAACAATCAGCTCAACAAAGAGCCCAACAACCTGATCCAAACTTTGGAGGTGCTCCGATGGAAATCAACGATGAAGA
CCTACCATTTTAA
ATGATAAATAACATAGTTTTAGTCGGAAGACTAACTAAAGATGTAGAACTTAGATATACTCCACAAAATCAAGCAACAGC
AACTTTCTCGCTTGCAGTGAGTCGCTCTTTCAAAAATGCCAGTGGAGAACGTGAAACAGATTTTATTAACTGTGTTATCT
GGCGACAACAAGCTGAAAATATGGCAAATTTCACACATAAAGGAAGCTTGATTGGTATCACTGGTAGAATCCAAACTCGA
AACTATGAAAATCAACAAGGACAACGTATTTACGTTACTGAAGTTGTTGCAGATAGTTTCCAACTTCTTGAAAGTAGAAG
CCAAGGTCAACAACAGCAACAACAAGGGCAGTATCAGGGACAACAAGGGAATTACAATCAAAACCAAAATAATTACCAAA
ATCAAGGTCAACAAAATACCGTTCCACAGCAACATAACCAAGGTAACTACCAAAGACAACCTCAAGGTAATTATCAAAAT
CAGCAACAATCAGCTCAACAAAGAGCCCAACAACCTGATCCAAACTTTGGAGGTGCTCCGATGGAAATCAACGATGAAGA
CCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.208 |
100 |
0.558 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.083 |
100 |
0.526 |
| ssb | Glaesserella parasuis strain SC1401 |
35.025 |
100 |
0.363 |