Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | A426_RS03540 | Genome accession | NZ_CP007021 |
| Coordinates | 690750..691229 (+) | Length | 159 a.a. |
| NCBI ID | WP_023552271.1 | Uniprot ID | A0A9W5CB87 |
| Organism | Listeria monocytogenes serotype 1/2a str. 99-6370 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 685750..696229
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A426_RS03485 (A426_0678) | - | 685771..686127 (+) | 357 | WP_023552245.1 | hypothetical protein | - |
| A426_RS03490 (A426_0679) | - | 686124..686540 (+) | 417 | WP_023552247.1 | hypothetical protein | - |
| A426_RS15665 | - | 686537..686713 (+) | 177 | WP_023552249.1 | hypothetical protein | - |
| A426_RS03495 (A426_0680) | - | 686728..687447 (+) | 720 | WP_023552251.1 | DUF2786 domain-containing protein | - |
| A426_RS03500 (A426_0681) | - | 687451..687753 (+) | 303 | WP_023552253.1 | hypothetical protein | - |
| A426_RS03505 (A426_0682) | - | 687750..688151 (+) | 402 | WP_023552255.1 | YopX family protein | - |
| A426_RS03510 (A426_0683) | - | 688151..688861 (+) | 711 | WP_023552257.1 | hypothetical protein | - |
| A426_RS03515 (A426_0684) | - | 688874..689062 (+) | 189 | WP_023552259.1 | hypothetical protein | - |
| A426_RS03520 (A426_0685) | - | 689059..689520 (+) | 462 | WP_023552261.1 | hypothetical protein | - |
| A426_RS03525 (A426_0686) | - | 689517..689900 (+) | 384 | WP_023552263.1 | hypothetical protein | - |
| A426_RS03530 (A426_0687) | - | 689921..690169 (+) | 249 | WP_023552266.1 | ASCH/PUA domain-containing protein | - |
| A426_RS03535 (A426_0688) | - | 690169..690750 (+) | 582 | WP_023552268.1 | DUF3310 domain-containing protein | - |
| A426_RS03540 (A426_0689) | ssbA | 690750..691229 (+) | 480 | WP_023552271.1 | single-stranded DNA-binding protein | Machinery gene |
| A426_RS03545 (A426_0690) | - | 691250..691489 (+) | 240 | WP_023552274.1 | hypothetical protein | - |
| A426_RS03550 | - | 691495..691665 (+) | 171 | WP_023552276.1 | hypothetical protein | - |
| A426_RS03555 (A426_0691) | - | 691736..692254 (+) | 519 | WP_023552279.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| A426_RS03560 (A426_0692) | - | 692251..692793 (+) | 543 | WP_023552281.1 | tyrosine-type recombinase/integrase | - |
| A426_RS03565 (A426_0693) | - | 692809..693141 (+) | 333 | WP_023552283.1 | hypothetical protein | - |
| A426_RS03570 (A426_0694) | - | 693412..693738 (+) | 327 | WP_023552285.1 | hypothetical protein | - |
| A426_RS15905 | - | 693876..694097 (+) | 222 | WP_223201765.1 | HNH endonuclease signature motif containing protein | - |
| A426_RS03580 (A426_0696) | - | 694192..694719 (+) | 528 | WP_012951321.1 | phage terminase small subunit P27 family | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 17493.45 Da Isoelectric Point: 5.2652
>NTDB_id=115981 A426_RS03540 WP_023552271.1 690750..691229(+) (ssbA) [Listeria monocytogenes serotype 1/2a str. 99-6370]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNPGRASTNDYQNKANYSNNIQTSSYAADASQKGGAFVNDSKPIDIPDDDLPF
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNPGRASTNDYQNKANYSNNIQTSSYAADASQKGGAFVNDSKPIDIPDDDLPF
Nucleotide
Download Length: 480 bp
>NTDB_id=115981 A426_RS03540 WP_023552271.1 690750..691229(+) (ssbA) [Listeria monocytogenes serotype 1/2a str. 99-6370]
ATGATGAATCGTGTAGTGCTTGTAGGTCGATTAACTAAAGACCCTGATTTACGATATACGCCAGCAGGCGCGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGAAAACCAGCAGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGACGGTCGCGTACAGACTCGA
AATTACGAAGATAACGACGGTAAACGTGTTTTCGTTACAGAAGTAGTAGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
CAACCCAGGAAGAGCTTCAACAAATGATTATCAAAACAAAGCTAATTATTCAAACAACATCCAAACAAGCTCATATGCAG
CGGATGCGAGTCAGAAAGGCGGTGCATTTGTTAATGATAGCAAGCCAATCGATATTCCAGATGATGATTTACCGTTTTAA
ATGATGAATCGTGTAGTGCTTGTAGGTCGATTAACTAAAGACCCTGATTTACGATATACGCCAGCAGGCGCGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGAAAACCAGCAGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGACGGTCGCGTACAGACTCGA
AATTACGAAGATAACGACGGTAAACGTGTTTTCGTTACAGAAGTAGTAGCTGAATCAGTTCAATTCTTAGAACCTAAAAA
CAACCCAGGAAGAGCTTCAACAAATGATTATCAAAACAAAGCTAATTATTCAAACAACATCCAAACAAGCTCATATGCAG
CGGATGCGAGTCAGAAAGGCGGTGCATTTGTTAATGATAGCAAGCCAATCGATATTCCAGATGATGATTTACCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.798 |
100 |
0.692 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.757 |
100 |
0.585 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
66.038 |
66.667 |
0.44 |
| ssb | Neisseria meningitidis MC58 |
33.333 |
100 |
0.365 |