Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   QOR71_RS08235 Genome accession   NZ_OX461103
Coordinates   1626121..1626810 (-) Length   229 a.a.
NCBI ID   WP_000516681.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-149     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1621121..1631810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR71_RS08215 dnaI 1621924..1622826 (-) 903 WP_000843626.1 primosomal protein DnaI -
  QOR71_RS08220 - 1622823..1623998 (-) 1176 WP_000074512.1 DnaD domain protein -
  QOR71_RS08225 nrdR 1623998..1624477 (-) 480 WP_001203682.1 transcriptional regulator NrdR -
  QOR71_RS08230 - 1624626..1626131 (-) 1506 WP_000791108.1 HAMP domain-containing histidine kinase -
  QOR71_RS08235 covR 1626121..1626810 (-) 690 WP_000516681.1 response regulator transcription factor Regulator
  QOR71_RS08240 - 1627045..1627578 (-) 534 WP_000927549.1 YceD family protein -
  QOR71_RS08245 htpX 1627683..1628573 (-) 891 WP_000966825.1 zinc metalloprotease HtpX -
  QOR71_RS08250 - 1628594..1629148 (-) 555 WP_000537055.1 LemA family protein -
  QOR71_RS08255 rsmG 1629276..1629989 (+) 714 WP_000188797.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QOR71_RS08260 - 1630004..1631383 (+) 1380 WP_000680112.1 potassium transporter TrkG -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26547.55 Da        Isoelectric Point: 4.8094

>NTDB_id=1159777 QOR71_RS08235 WP_000516681.1 1626121..1626810(-) (covR) [Streptococcus agalactiae isolate MRI Z2-149]
MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLMLPEMDGFEITRRLQAEKTTYIMMMT
ARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEIETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKRE
FDLLNVLMTNMNRVMTREELLEHVWKYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1159777 QOR71_RS08235 WP_000516681.1 1626121..1626810(-) (covR) [Streptococcus agalactiae isolate MRI Z2-149]
ATGGGTAAAAAGATCTTAATAATCGAAGATGAGAAAAATTTAGCTCGCTTCGTCTCGTTAGAACTACTACATGAAGGATA
TGATGTTGTTGTTGAAACAAACGGTCGTGAAGGATTGGACACAGCATTAGAAAAAGATTTTGATTTGATTCTACTGGATT
TAATGCTTCCAGAGATGGATGGTTTCGAAATCACACGTCGCCTGCAGGCTGAAAAAACAACCTATATCATGATGATGACA
GCACGTGATTCTGTTATGGATATTGTAGCTGGTCTTGATCGTGGAGCAGATGATTATATTGTTAAGCCGTTTGCAATCGA
AGAATTATTAGCACGTGTTAGGGCGATTTTCCGACGCCAAGAAATTGAAACGAAGACAAAAGAAAAAGGTGATAGCGGTA
GTTTCCGTGATTTATCATTAAATACTCATAATCGTTCAGCGATGCGTGGTGATGAGGAAATTTCACTAACAAAACGTGAA
TTTGATTTATTGAATGTCTTGATGACAAATATGAATCGTGTTATGACACGAGAAGAGTTGCTAGAACATGTTTGGAAATA
CGATGTGGCAGCAGAGACAAACGTTGTTGATGTTTATATCCGTTACCTAAGAGGTAAAATTGATATCCCAGGTCGTGAAT
CATATATTCAAACTGTTCGCGGAATGGGCTATGTGATTCGTGAAAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

79.476

100

0.795
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.228

99.563

0.659
  vicR Streptococcus mutans UA159

45.887

100

0.463
  micA Streptococcus pneumoniae Cp1015

43.478

100

0.437

Multiple sequence alignment