Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QOR71_RS04325 Genome accession   NZ_OX461103
Coordinates   811026..811973 (+) Length   315 a.a.
NCBI ID   WP_283572957.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-149     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 806026..816973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR71_RS04300 - 806375..807055 (+) 681 WP_000656582.1 VIT family protein -
  QOR71_RS04305 - 807206..807907 (+) 702 WP_001263956.1 glucosamine-6-phosphate deaminase -
  QOR71_RS04310 - 807979..808935 (-) 957 WP_000523789.1 glutathione S-transferase family protein -
  QOR71_RS04315 - 809031..809750 (+) 720 WP_001234956.1 pseudouridine synthase -
  QOR71_RS04320 - 809823..810974 (+) 1152 WP_001086200.1 MFS transporter -
  QOR71_RS04325 coiA 811026..811973 (+) 948 WP_283572957.1 competence protein CoiA family protein Machinery gene
  QOR71_RS04330 pepF 811989..813794 (+) 1806 WP_001282902.1 oligoendopeptidase F Regulator
  QOR71_RS04335 - 813989..814615 (+) 627 WP_000736935.1 HAD hydrolase-like protein -
  QOR71_RS04340 - 814689..815396 (+) 708 WP_000250853.1 O-methyltransferase -
  QOR71_RS04345 prsA 815457..816386 (+) 930 WP_000857822.1 peptidylprolyl isomerase PrsA -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 37807.57 Da        Isoelectric Point: 9.5842

>NTDB_id=1159765 QOR71_RS04325 WP_283572957.1 811026..811973(+) (coiA) [Streptococcus agalactiae isolate MRI Z2-149]
MLIAKDKQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFYHENESNEHLQLKAKLYMSLSRENE
TMLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKHRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNILTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1159765 QOR71_RS04325 WP_283572957.1 811026..811973(+) (coiA) [Streptococcus agalactiae isolate MRI Z2-149]
ATGTTAATTGCTAAAGACAAACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAGGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTTATCATGAAAATGAGTCTAATGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTATGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTCAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGCATCGTTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTACTGAGACTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATACCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAAGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATATATTGACCCAAGAGCTAATGATGTTTTTTCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTAGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

49.367

100

0.495
  coiA Streptococcus pneumoniae Rx1

49.367

100

0.495
  coiA Streptococcus pneumoniae D39

49.367

100

0.495
  coiA Streptococcus pneumoniae R6

49.367

100

0.495
  coiA Streptococcus mitis NCTC 12261

48.734

100

0.489
  coiA Lactococcus lactis subsp. cremoris KW2

39.752

100

0.406

Multiple sequence alignment