Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QOR57_RS08565 Genome accession   NZ_OX461088
Coordinates   1662926..1663417 (-) Length   163 a.a.
NCBI ID   WP_000609584.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-338     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1657926..1668417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR57_RS08550 - 1660832..1661503 (-) 672 WP_000174846.1 DUF1129 family protein -
  QOR57_RS08555 - 1661528..1662472 (-) 945 WP_000812124.1 magnesium transporter CorA family protein -
  QOR57_RS08560 rpsR 1662642..1662881 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  QOR57_RS08565 ssbA 1662926..1663417 (-) 492 WP_000609584.1 single-stranded DNA-binding protein Machinery gene
  QOR57_RS08570 rpsF 1663429..1663716 (-) 288 WP_001151773.1 30S ribosomal protein S6 -
  QOR57_RS08575 mutY 1664780..1665934 (+) 1155 WP_161508544.1 A/G-specific adenine glycosylase -
  QOR57_RS08580 - 1666111..1666704 (+) 594 WP_000402388.1 helix-turn-helix transcriptional regulator -
  QOR57_RS08585 trxA 1666750..1667082 (-) 333 WP_001932060.1 thioredoxin -
  QOR57_RS08590 - 1667145..1667645 (-) 501 WP_000446807.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18175.85 Da        Isoelectric Point: 4.9119

>NTDB_id=1159673 QOR57_RS08565 WP_000609584.1 1662926..1663417(-) (ssbA) [Streptococcus agalactiae isolate MRI Z2-338]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSPNSYNNGGYNNAPSNNSYSAPSQQTPNFSRDESPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1159673 QOR57_RS08565 WP_000609584.1 1662926..1663417(-) (ssbA) [Streptococcus agalactiae isolate MRI Z2-338]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCACCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTC
CTTCTCAACAAACACCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.714

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

59.064

100

0.62
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.871

0.374
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368

Multiple sequence alignment